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Research Assessment Exercise 2007 University of Oulu


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2d. The best publications


The list comprises 36 publications, which equals three times the number of professors in the Department. The list has been compiled so that each section of the Department (animal ecology, animal physiology, genetics, plant ecology and plant physiology) has contributed roughly in proportion to the number of its professors. The criteria used for selecting the publication were, in addition to bibliometric indices like impact factor and citations, the self-assessed importance of the papers in their respective fields. The publications are attached in Volume 2 (2 parts) of this report.


  1. Anttila, Katja; Mänttäri, Satu & Järvilehto, Matti Effects of different training protocols on Ca2+ handling and oxidative capacity in skeletal muscle of Atlantic salmon (Salmo salar L.). - The Journal of Experimental Biology, 2006, 209:2971-2978.

  2. Beye, M.; Gattermeier, I.; Hasselmann, M.; Gempe, T.; Schioett, M.; Baines, J.F.; Schlipalius, D.; Mougel, C.E.; Rueppell, O.; Sirviö, Anu; Guzmán-Novoa, E.; Hunt, G.; Solignac, M. & Page, R.E. Jr. Exceptionally high levels of recombination across the honey bee genome. - Genome Research, 2006, 16:1339-1344.

  3. Broggi, Juli; Hohtola, Esa; Orell, Markku & Nilsson, J-Å. Local adaptation to winter conditions in a passerine spreading north: a common-garden approach. - Evolution, 2005, 59: 1600-1603.

  4. Brotons, L.; Mönkkönen, Mikko & Martin, J. L. Are fragments Islands? Landscape context and density-area relationships in boreal forest birds. - American Naturalist, 2003, 162:343-357.

  5. Callaghan, T. V. (Lead author); Björn, L. O.; Chapin III, F. S.; Chernov, Y.; Christensen, T. R.; Huntley, B.; Ims, R.; Johansson, M.; Riedlinger, D. J. et al. (Contributing authors); Elster, J. et al. Laine, Kari; Taulavuori, Erja; Taulavuori, Kari Arctic tundra and polar desert ecosystems. - Arctic Climate Impact Assessment. Cambridge University 2004, pp. 243-352.

In volume 2 - part 2

  1. Dvornyk, V.; Sirviö, A.; Mikkonen, Merja & Savolainen, Outi Low nucleotide diversity at the pal1 locus in the widely distributed Pinus sylvestris. - Molecular Biology and Evolution, 2002, 19:179-188.

  2. Golozoubova, V.; Hohtola, Esa; Matthias, A.; Jacobsson, A.; Cannon, B. & Nedergaard, J. Only UCP1 can mediate adaptive nonshivering thermogenesis in the cold. - FASEB Journal, 2001, 15:2048-2050.

  3. Häggman, Hely; Frey, A.D.;Aronen, T.; Ryynänen, L.; Julkunen-Tiitto, R.; Tiimonen, H.; Pihakaski-Maunsbach, K.; Jokipii, S.; Chen, X. & Kallio, P.T. Expression of Vitreoscilla hemoglobin in hybrid aspen (Populus tremula x tremuloides). - Plant Biotechnology Journal 2003, 1:287-300.

  4. Härdling, R. & Kaitala, Arja The evolution of repeated mating under sexual conflict. - Journal of Evolutionary Biology, 2005, 18:106-115.

  5. Helle, S.; Lummaa, V. & Jokela, Jukka Sons reduced maternal longevity in preindustrial humans. - Science, 2002, 296:1085.

  6. Helle, S.; Lummaa, V. & Jokela, Jukka Accelerated immunosenescence in preindustrial twin mothers. - Proceedings of the National Academy of Sciences of the United States of America, 2004, 1013:12391-12396.

  7. Huttunen, Satu; Lappalainen N. & Turunen J. UV-absorbing compounds in subarctic herbarium bryophytes. - Environmental Pollution 2005, 133,303-314.

  8. Hyvärinen Marko; Härding, R. & Tuomi Juha Cyanobacterial lichen symbiosis: the fungal partner as an optimal harvester. - OIKOS 2002, 98, 498-504.

  9. Jaakola, Laura; Määttä, K., Kärenlampi S. & Hohtola, Anja Activation of flavonoid biosynthesis by solar radiation in bilberry leaves. - Planta, 2004, 218: 721-728.

  10. Jaakola, Laura; Määttä, K.; Pirttilä, Anna Maria; Törrönen, R.; Kärenlampi, S. & Hohtola, Anja Expression of structural genes involved in anthocyanin biosynthesis in relation to anthocyanin and flavonoid levels during bilberry (Vaccinium myrtillus L.) fruit development. - Plant Physiology, 2002, 130:729-739.

  11. Jäkäläniemi, Anne; Tuomi, Juha & Siikamäki, Pirkko Conservation of species in dynamic landscapes: divergent fates of Silene tatrica populations in riparian habitats. - Conservation Biology 2006, 3: 844-852.

  12. Juday, G.P. (Lead author); Barber, V.; Vaganov, E.; Sparrow, S.; Duffy, P. (Contributing authors); Berg,E.; D'Arrigo, R.; Eggertsson, P.; Furyaev, V. V.; Hogg, T.; Huttunen, Satu; Jacoby, G.; Kellomäki, S. et al. Forests, land management and agriculture. - Arctic Climate Impact Assessment.Cambridge University 2004, pp.781-862 .

In volume 2 - part 2

  1. Katvala, Mari & Kaitala, Arja Egg performance on an egg-carrying bug. Experiments in the field. - OIKOS, 2001, 93:188-193.

  2. Kuikka, Karita; Härmä, Esa; Markkola, Annamari; Rautio, Pasi; Roitto, Mari; Saikkonen, K.; Ahonen-Jonnarth, U.; Finlay, R. & Tuomi, Juha Severe defoliation of Scots pine reduces reproductive investment by ectomycorrhizal symbionts. - Ecology 2003, 84:2051-2061.

  3. Kuittinen, Helmi; de Haan, A.; Vogl, C.; Oikarinen, S.; Leppälä, J.; Koch, M.; Mitchell-Olds, T.; Langley, C. H. & Savolainen, Outi Comparing the linkage maps of the close relatives Arabidopsis lyrata and A. thaliana. - Genetics, 2004, 168:1575-1584.

  4. Kvist, Laura; Martens, J.; Nazarenko, A. A. & Orell, Markku Paternal leakage of mitochondrial DNA in the great tit (Parus major). - Molecular Biology and Evolution, 2003, 20:243-247.

  5. Muotka, Timo & Laasonen, P. Ecosystem recovery in restored headwater streams: the role of leaf retention. - Journal of Applied Ecology, 2002, 39: 145-156.

  6. Neale, D. B. & Savolainen, Outi Assosiation genetics of complex traits in conifers. - TRENDS in Plant Science 2004, 9:325-330.

  7. Niemi, K.; Sutela, Suvi; Häggman, Hely; Scagel, C.; Vuosku, J.; Jokela, A. & Sarjala, T. Changes in polyamine content and localization of ADC and ODC mRNA transcripts during mycorrhiza formation between Pinus sylvestris and Suillus variegatus. - Journal of Experimental Botany 2006, 57:2795-2804.

  8. Oksanen Jari & Minchin P.R. Continuum theory revisited: what shape are species responses along ecological gradients. - Ecological Modelling 2002, 157:119-129.

  9. Oksanen Jari; Läärä E.; Tolonen K. & Warner B.G. Confidence intervals for the optimum in the Gaussian response function. - Ecology 2001, 82:1191-1197.

  10. Orell, Markku & Belda, Eduardo J. Delayed cost of reproduction and senescence in the willow tit Parus montanus. - Journal of Animal Ecology 2002, 71:55-64.

  11. Paavola, R.; Muotka, Timo; Virtanen, Risto; Heino, J.; Jackson, D. & Mäki-Petäys, A. Spatial scale affects community concordance among fishes, benthic macroinvertebrates, and bryophytes in streams. - Ecological Applications 2006, 16:368-379.

  12. Peltonen, L. M. & Pyörnilä, Ahti Local action of exogenous nitric oxide (NO) on the skin blood flow of rock pigeons (Columba livia) is affected by acclimation and skin site. - Journal of Experimental Biology, 2004, 207:2611-2619.

  13. Pirttilä, Anna Maria; Laukkanen, H. & Hohtola, Anja Chitinase production in pine callus (Pinus sylvetris L.): a defense reaction against endophytes? - Planta, 2002, 214: 848-852.

  14. Sallinen, Pirkko; Saarela, Seppo; Ilves, Mika; Vakkuri, Olli & Leppäluoto, Juhani Expression of MT1 and MT2 melatonin receptor mRNA in several rat tissues. - Life Sciences, 2005, 76:1123-1134.

  15. Seppä, P.; Gyllenstrand, N.; Corander, J. & Pamilo, Pekka Coexistence of the social types: genetic population structure in the ant Formica exsecta. - Evolution, 2004, 58:2462-2471.

  16. Tero, Niina; Aspi, Jouni; Siikamäki, Pirkko; Jäkäläniemi, Anne and Tuomi, Juha Genetic structure and gene flow in a metapopulation of a endangered plant species, Silene tatarica. - Molecular Ecology 2003, 12:2073-2085.

  17. Virtanen Risto; Muotka Timo & Saksa M. . Species richness - standing crop relationship in stream bryophyte communities: patterns across multiple scales. - Journal of Ecology 2001, 89:14-20.

  18. Vuosku, Jaana; Jokela Anne; Läärä E.; Sääskilahti, M., Muilu, R., Sutela, Suvi; Altabella, T., Sarjala, T., Häggman, Hely Consistency of polyamine profiles and expression of arginine decarboxylase in mitosis during zygotic embryogenesis of Scots Pine. - Plant Physiology 2006, 142:1027-1038.

  19. Zietara, M. S. & Lumme, Jaakko Speciation by host switch and adaptive radiation in a fish parasite genus Gyrodactylus (Monogenea, Gyrodactylidae). - Evolution, 2002, 56:2445-2458.

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