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Cryptic and repeated ‘allopolyploid’ speciation within Allium przewalskianum Regel. (Alliaceae) from the Qinghai-Tibet Plateau


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Cryptic and repeated ‘allopolyploid’ speciation within Allium przewalskianum Regel. (Alliaceae) from the Qinghai-Tibet Plateau

Organisms Diversity & Evolution

Qianlong Liang, Xiaoxiao Hu, Guili Wu, Jianquan Liu*

*Corresponding author, e-mail: liujq@nwipb.ac.cn, postal address: MOE Key Laboratory for Bio-resources and Eco-environment, College of Life Science, Sichuan University, 24,South Section 1, Yihuan Road, Chengdu 610065, China

Table S1 Details of the Allium przewalskianum diploid–tetraploid complex sampling locations and sample sizes analyzed; P. denotes the population code.



P.

Location

Latitude(N)

Longitude(E)

Altitude(m)

Sample size(individual number)

AFLP

ITS

CHS

1

Huzhu, QH

37°03′ 

102°24′

2378

7

1

1

2

Ledu, QH

36°25′ 

102°46′

2560

7

1

1

3

Xining,QH

36°34′ 

101°54′

2210

8

1

1

4

Haiyan,QH

36°51′ 

101°03′

2950

8

2

1

5

Lintao,GS

35°23′ 

103°50′

1880

5

1

2

6

Luqu,GS

34°36′ 

102°28′

3120

6

1

1

7

Tongren,QH

35°16′ 

101°53′

3170

6

1

1

8

Guoluo,QH

33°43′ 

100°49′

3500

6

1

2

9

Hongyuan,SC

33°01′ 

102°36′

3470

7

1

1

10

Shiqu,SC

33°00′ 

98°20′

3970

8

2

3

11

Jiangda,XZ

31°27′ 

98°09′

3640

8

2

1

12

Yushu,QH

31°51′ 

96°18′

3660

8

1

2

13

Lixian,SC

31°28′ 

103°07′

1954

6

1

1

14

Aerjinshan,GS

38°33′ 

90°10′

3358

4

1

1

15

Dangjinshan,GS

39°23′ 

94°20′

3930

2

1

1

16

Yumen,GS

39°48′ 

97°17′

3361

4

1

1

17

Delingha,QH

37°27′ 

97°20′

3310

4

1

1

18

Xinghai,QH

35°53′ 

99°41′

3760

5

1

1

19

Shandan,GS

38°06′ 

101°33′

2612

5

1

1

20

Zeku,QH

35°12′ 

100°55′

3500

7

1

1

21

Yushu,QH

33°51′ 

97°11′

4020

3

1

1

22

Yushu,QH

33°00′ 

97°19′

3610

5

1

1

23

Yushu,QH

32°21′ 

96°26′

3680

3

1

1

24

Dingqing,XZ

31°30′

95°23′

3770

6

1

1

25

Leiwuqi,XZ

31°12′ 

96°36′

3800

5

1

1

26

Ranwu,XZ

29°30′ 

96°46′

3950

5

1

1

27

Dangxiong,XZ

30°32′ 

91°08′

4310

4

1

1

28

Kangma,XZ

28°33′ 

89°43′

4430

5

1

1

Note: (1) Abbreviations: QH, Qinghai; GS, Gansu; SC, Sichuan; XZ, Xizang; YN, Yunnan; (2) populations 1-12 are diploid; populations 13-28 are tetraploid and the population codes are in bold.
Table S2 AFLP adapter and primer sequences used in this study

Code

Name

Sequence

E-F

EcoR 1-F(adapter)

5’-CTCGTAGACTGCGTACC-3’

E-R

EcoR 1-R(adapter)

5’-AATTGGTACGCAGTCTAC-3’

M-F

Mse 1-F(adapter)

5’-GACGATGAGTCCTGAG-3’

M-R

Mse 1-R(adapter)

5’-TACTCAGGACTCAT-3’

E-A

EcoR 1-A(Primer)

5’-GACTGCGTACCAATTCA-3’

M-C

Mse 1-C(Primer)

5’-GATGAGTCCTGAGTAAC-3’

E-ACC

EcoR 1-ACC(Primer)

5’-GACTGCGTACCAATTCACC-3’

M-CAC

Mse 1-CAC(Primer)

5’-GAT GAG TCC TGA GTA ACAC-3’

E-ACT

EcoR 1-ACT(Primer)

5’-GACTGCGTACCAATTCACT-3’

M-CTA

Mse 1-CTA(Primer)

5’-GAT GAG TCC TGA GTA ACTA-3’


Table S3 Population codes (P.), plant sources, and locality of the sequenced material; ITS and CHS GenBank accession numbers for all sequences included in this study.

P.

Voucher

Locality

ITS

CHS

1

J. Q. Liu-AO 01

China: Huzhu, QH

KM189069

KM188957

1

J. Q. Liu-AO 01

China: Huzhu, QH

KM189070

KM188958

1

J. Q. Liu-AO 01

China: Huzhu, QH

-

KM188959

2

J. Q. Liu-AO 69

China: Ledu, QH

KM189071

KM188960

2

J. Q. Liu-AO 69

China: Ledu, QH

KM189072

KM188961

2

J. Q. Liu-AO 69

China: Ledu, QH

-

KM188962

3

J. Q. Liu-AO 72

China: Xining, QH

KM189073

KM188963

3

J. Q. Liu-AO 72

China: Xining, QH

KM189074

KM188964

3

J. Q. Liu-AO 72

China: Xining, QH

-

KM188965

4

J. Q. Liu-AO 14

China: Haiyan, QH

KM189075

KM188966

4

J. Q. Liu-AO 14

China: Haiyan, QH

KM189076

KM188967

4

J. Q. Liu-AO 14

China: Haiyan, QH

KM189077

-

5

J. Q. Liu-AO 66

China: Lintao, GS

KM189078

KM188968

5

J. Q. Liu-AO 66

China: Lintao, GS

-

KM188969

5

J. Q. Liu-AO 66

China: Lintao, GS

-

KM188970

5

J. Q. Liu-AO 66

China: Lintao, GS

-

KM188971

6

J. Q. Liu-2006033

China: Luqu, GS

KM189079

KM188972

6

J. Q. Liu-2006033

China: Luqu, GS

-

KM188973

7

J. Q. Liu-AO 54

China: Tongren, QH

KM189080

KM188974

7

J. Q. Liu-AO 54

China: Tongren, QH

-

KM188975

7

J. Q. Liu-AO 54

China: Tongren, QH

-

KM188976

7

J. Q. Liu-AO 54

China: Tongren, QH

-

KM188977

7

J. Q. Liu-AO 54

China: Tongren, QH

-

KM188978

7

J. Q. Liu-AO 54

China: Tongren, QH

-

KM188979

7

J. Q. Liu-AO 54

China: Tongren, QH

-

KM188980

8

J. Q. Liu-AO 53

China: Guoluo, QH

KM189081

KM188981

8

J. Q. Liu-AO 53

China: Guoluo, QH

-

KM188982

8

J. Q. Liu-AO 53

China: Guoluo, QH

-

KM188983

8

J. Q. Liu-AO 53

China: Guoluo, QH

-

KM188984

8

J. Q. Liu-AO 53

China: Guoluo, QH

-

KM188985

8

J. Q. Liu-AO 53

China: Guoluo, QH

-

KM188986

9

J. Q. Liu-2006026

China: Hongyuan, SC

KM189082

KM188987

9

J. Q. Liu-2006026

China: Hongyuan, SC

-

KM188988

10

J. Q. Liu-AO 108

China: Shiqu, SC

KM189083

KM188989

10

J. Q. Liu-AO 108

China: Shiqu, SC

KM189084

KM188990

10

J. Q. Liu-AO 108

China: Shiqu, SC

KM189085

KM188991

10

J. Q. Liu-AO 108

China: Shiqu, SC

-

KM188992

10

J. Q. Liu-AO 108

China: Shiqu, SC

-

KM188993

10

J. Q. Liu-AO 108

China: Shiqu, SC

-

KM188994

10

J. Q. Liu-AO 108

China: Shiqu, SC

-

KM188995

11

J. Q. Liu-AO 117

China: Jiangda, XZ

KM189086

KM188996

11

J. Q. Liu-AO 117

China: Jiangda, XZ

KM189087

KM188997

11

J. Q. Liu-AO 117

China: Jiangda, XZ

KM189088

KM188998

11

J. Q. Liu-AO 117

China: Jiangda, XZ

KM189089

-

12

J. Q. Liu-AO 106

China: Yushu, QH

KM189090

KM188999

12

J. Q. Liu-AO 106

China: Yushu, QH

KM189091

-

13

J. Q. Liu-TB07024

China: Lixian, SC

KM189092

KM189000

13

J. Q. Liu-TB07024

China: Lixian, SC

KM189093

KM189001

13

J. Q. Liu-TB07024

China: Lixian, SC

-

KM189002

13

J. Q. Liu-TB07024

China: Lixian, SC

-

KM189003

13

J. Q. Liu-TB07024

China: Lixian, SC

-

KM189004

14

J. Q. Liu-TB07121

China: Aerjinshan, XJ

KM189094

KM189005

14

J. Q. Liu-TB07121

China: Aerjinshan, XJ

-

KM189006

14

J. Q. Liu-TB07121

China: Aerjinshan, XJ

-

KM189007

14

J. Q. Liu-TB07121

China: Aerjinshan, XJ

-

KM189008

14

J. Q. Liu-TB07121

China: Aerjinshan, XJ

-

KM189009

15

J. Q. Liu-TB07117

China: Dangjinshan, GS

KM189095

KM189010

15

J. Q. Liu-TB07117

China: Dangjinshan, GS

-

KM189011

15

J. Q. Liu-TB07117

China: Dangjinshan, GS

-

KM189012

15

J. Q. Liu-TB07117

China: Dangjinshan, GS

-

KM189013

16

J. Q. Liu-TB07113

China: Yumen, GS

KM189096

KM189014

16

J. Q. Liu-TB07113

China: Yumen, GS

-

KM189015

16

J. Q. Liu-TB07113

China: Yumen, GS

-

KM189016

16

J. Q. Liu-TB07113

China: Yumen, GS

-

KM189017

16

J. Q. Liu-TB07113

China: Yumen, GS

-

KM189018

17

J. Q. Liu-AO 160

China: Delingha, QH

KM189097

KM189019

17

J. Q. Liu-AO 160

China: Delingha, QH

KM189098

KM189020

17

J. Q. Liu-AO 160

China: Delingha, QH

-

KM189021

17

J. Q. Liu-AO 160

China: Delingha, QH

-

KM189022

17

J. Q. Liu-AO 160

China: Delingha, QH

-

KM189023

17

J. Q. Liu-AO 160

China: Delingha, QH

-

KM189024

18

J. Q. Liu-AO 82

China: Xinghai, QH

KM189099

KM189025

18

J. Q. Liu-AO 82

China: Xinghai, QH

KM189100

KM189026

18

J. Q. Liu-AO 82

China: Xinghai, QH

-

KM189027

18

J. Q. Liu-AO 82

China: Xinghai, QH

-

KM189028

18

J. Q. Liu-AO 82

China: Xinghai, QH

-

KM189029

19

J. Q. Liu-TB07101

China: Shandan, GS

KM189101

KM189030

19

J. Q. Liu-TB07101

China: Shandan, GS

KM189102

KM189031

19

J. Q. Liu-TB07101

China: Shandan, GS

-

KM189032

19

J. Q. Liu-TB07101

China: Shandan, GS

-

KM189033

19

J. Q. Liu-TB07101

China: Shandan, GS

-

KM189034

20

J. Q. Liu-AO 41

China: Zeku, QH

KM189103

KM189035

20

J. Q. Liu-AO 41

China: Zeku, QH

KM189104

KM189036

20

J. Q. Liu-AO 41

China: Zeku, QH

-

KM189037

20

J. Q. Liu-AO 41

China: Zeku, QH

-

KM189038

20

J. Q. Liu-AO 41

China: Zeku, QH

-

KM189039

21

J. Q. Liu-AO 89

China: Yushu, QH

KM189105

KM189040

21

J. Q. Liu-AO 89

China: Yushu, QH

KM189106

KM189041

21

J. Q. Liu-AO 89

China: Yushu, QH

-

KM189042

22

J. Q. Liu-AO 95

China: Yushu, QH

KM189107

KM189043

22

J. Q. Liu-AO 95

China: Yushu, QH

KM189108

KM189044

22

J. Q. Liu-AO 95

China: Yushu, QH

-

KM189045

22

J. Q. Liu-AO 95

China: Yushu, QH

-

KM189046

23

J. Q. Liu-AO 101

China: Yushu, QH

KM189109

KM189047

23

J. Q. Liu-AO 101

China: Yushu, QH

KM189110

KM189048

23

J. Q. Liu-AO 101

China: Yushu, QH

-

KM189049

23

J. Q. Liu-AO 101

China: Yushu, QH

-

KM189050

24

J. Q. Liu-AO 127

China: Dingqing, XZ

KM189111

KM189051

24

J. Q. Liu-AO 127

China: Dingqing, XZ

KM189112

KM189052

24

J. Q. Liu-AO 127

China: Dingqing, XZ

-

KM189053

24

J. Q. Liu-AO 127

China: Dingqing, XZ

-

KM189054

25

J. Q. Liu-AO 121

China: Leiwuqi, XZ

KM189113

KM189055

25

J. Q. Liu-AO 121

China: Leiwuqi, XZ

KM189114

KM189056

25

J. Q. Liu-AO 121

China: Leiwuqi, XZ

-

KM189057

26

J. Q. Liu-2006290

China: Ranwu, XZ

KM189115

KM189058

26

J. Q. Liu-2006290

China: Ranwu, XZ

KM189116

KM189059

26

J. Q. Liu-2006290

China: Ranwu, XZ

-

KM189060

26

J. Q. Liu-2006290

China: Ranwu, XZ

-

KM189061

26

J. Q. Liu-2006290

China: Ranwu, XZ

-

KM189062

27

J. Q. Liu-AO 157

China: Dangxiong, XZ

KM189117

KM189063

27

J. Q. Liu-AO 157

China: Dangxiong, XZ

KM189118

KM189064

27

J. Q. Liu-AO 157

China: Dangxiong, XZ

-

KM189065

28

J. Q. Liu-2006219

China: Kangma, XZ

KM189119

KM189066

28

J. Q. Liu-2006219

China: Kangma, XZ

KM189120

KM189067

28

J. Q. Liu-2006219

China: Kangma, XZ

-

KM189068

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