Supplementary Material
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| Supplementary Material
Accession numbers and sources of sequences used in this study (Genbank, unless stated otherwise). Eubacteria Anaerocellum thermophilum T31337 Bacillus licheniformis AAR29083 Bacillus pumilus AAF15367 Bacillus sp. CAB38941 Bacillus sp. P28622 Caldicellulosiruptor saccharolyticus P22534 Caldicellulosiruptor sp. AAK06394 Cellulomonas fimi P26225 Clostridium acetobutylicum NP_347549 Clostridium cellulovorans AAC38572 Clostridium cellulovorans I40807 Clostridium stercorarium CAA39010 Clostridium stercorarium P23659 Clostridium thermocellum CAB76935 Clostridium thermocellum CAE51308 Clostridium thermocellum P26224 Clostridium thermocellum Q02934 Clostridium thermocellum ZP_60013 Clostridium thermocellum ZP_60822 Clostridium thermocellum ZP_60825 Clostridium thermocellum ZP_60909 Clostridium thermocellum ZP_61423 Myxobacter sp. AAF19168 Synechocystis sp. NP_442377 Thermobifida fusca ZP_56987 Thermonospora sp. 1JS4, P26221 Amoebozoa ‘DDB’ refers to Dictybase accession (dictybase.org). Dictyostelium discoideum P22699 Dictyostelium discoideum DDB0185953 Dictyostelium discoideum DDB0185953 Dictyostelium discoideum DDB0185916 Dictyostelium discoideum DDB0215882 Dictyostelium discoideum DDB0186900 Dictyostelium discoideum DDB0218437 Metazoa Ciona accessions refer to Joint Genome Institute (www.jgi.doe.gov). Strongylocentrotus and Apis accessions refer to Baylor College of Medicine (www.hgsc.bcm.tmc.edu). For Lumbricus accessions see www.earthworms.org For Halocynthia accession see www.genome.ad.jp/magest/ For Crassostrea virginica accession see www.marinegenomics.org For Gammarus pulex accession see ecoworm.bios.cf.ac.uk For Daphnia magna accession see iubio.bio.indiana.edu:7182 Apis mellifera AADG02010706 Apis mellifera XP_396791 Argopecten irradians CN782937 Biomphalaria glabrata CK149333, AA547748, AY651250 Biomphalaria glabrata CN476098, CD132744 Botryllus schlosseri AF201179 Callinectes sapidus CV161315 Cherax quadricarinatus AAD38027 Cherax quadricarinatus AAO61672 Ciona intestinalis ci0100130070 Ciona intestinalis ci0100130680 Ciona intestinalis ci0100131397 Ciona intestinalis ci0100131904 Ciona intestinalis ci0100138632 Ciona intestinalis ci0100138817 Ciona intestinalis ci0100144700 Ciona intestinalis ci0100146240 Ciona intestinalis ci0100152113 Ciona savignyi AACT01004821 Ciona savignyi AACT01007013 Ciona savignyi AACT01062526 Coptotermes acinaciformis AF336120 Coptotermes formosanus BAB40693 Coptotermes formosanus BAB40695 Coptotermes formosanus BAB40696 Coptotermes formosanus BAB40697 Dreissena polymorpha AJ517628 Haliotis discus BAD01504 Halocynthia roretzi 125M03_3 Homarus americanus CN853128, CN951583, CN854364, CN950017 Homo sapiens FLJ38599 / AK095918 Lumbricus rubellus CO058781, CO058806, CO058769, CO047869 Lumbricus rubellus LRC00474 contig-1, CN468519, CO048027, CF798831 Lumbricus rubellus LRC00474 contig-2, BU093804, BU093819, BU093904, BU093921, CA036371, CF798831, CF799589, CO048235, CO047659 Lymnaea stagnalis CN810987 Mastotermes darwiniensis CAD54726 Mastotermes darwiniensis CAD54727 Mastotermes darwiniensis CAD54728 Mastotermes darwiniensis CAD54729 Mastotermes darwiniensis CAD54730 Molgula tectiformis AU283488 Nasutitermes takasagoensis 1KS8 Nasutitermes takasagoensis BAA33708 Nasutitermes walkeri BAA33709 Oikopleura dioica AAS21473 Panesthia cribrata AAF80584 Panesthia cribrata AAF80585 Reticulitermes speratus BAA31326 Reticulitermes speratus BAA34050 Schistosoma mansoni CD132744 Strongylocentrotus purpuratus BG784258, SPWHP1D432801A, SPWHP1E401141A, SPWDP1E932112A, SPWBP1E9604A, SPWCP1D74209A, SPWDP1D143373A, SPWDP1D143932A SPWGR1E459264A Timarcha balearica AJ537946 Fungi Cryptococcus accession refers to The Institute for Genomics Research (www.tigr.org) Cryptococcus neoformans 184.m04399, CND00720 Ustilago maydis AACP01000015, EAK81084 Phanerochaete chrysosporium AAM22492 Piromyces sp. AF459452 Piromyces sp. AAP30753 Plants Angiosperms: Arabidopsis thaliana AAK59818 Arabidopsis thaliana AAM63253 Arabidopsis thaliana AAM63477 Arabidopsis thaliana CAA67156 Arabidopsis thaliana NP_171779 Arabidopsis thaliana NP_173423 Arabidopsis thaliana NP_173701 Arabidopsis thaliana NP_173735 Arabidopsis thaliana NP_175323 Arabidopsis thaliana NP_176621 Arabidopsis thaliana NP_176738 Arabidopsis thaliana NP_181982 Arabidopsis thaliana NP_181984 Arabidopsis thaliana NP_181985 Arabidopsis thaliana NP_189972 Arabidopsis thaliana NP_192138 Arabidopsis thaliana NP_194087 Arabidopsis thaliana NP_194157 Arabidopsis thaliana NP_195610 Arabidopsis thaliana NP_195611 Arabidopsis thaliana NP_849349 Arabidopsis thaliana T01929 Arabidopsis thaliana T04021 Arabidopsis thaliana T06061 Atriplex lentiformis BAB32662 Brassica napus CAB51903 Capsicum annuum CAA65828 Capsicum annuum S57663 Citrus sinensis T07883 Citrus sinensis T07885 Fragaria x ananassa AAC78298 Fragaria x ananassa CAB43937 Fragaria x ananassa CAC94006 Hordeum vulgare BAA94257 Lilium longiflorum AAP38171 Lycopersicon esculentum AAD08699 Lycopersicon esculentum S57808 Lycopersicon esculentum T06348 Lycopersicon esculentum T07025 Lycopersicon esculentum T07612 Lycopersicon esculentum T06350 Malus x domestica AAQ55294 Medicago truncatula AAQ63883 Nicotiana alata AAD28258 Nicotiana tabacum AAL30452 Nicotiana tabacum AAL30453 Nicotiana tabacum AAL30454 Oryza sativa AAP03405 Oryza sativa BAD05437 Oryza sativa BAD07956 Oryza sativa BAD10555 Oryza sativa CAD41250 Oryza sativa CAE01493 Oryza sativa CAE03241 Oryza sativa NP_908597 Oryza sativa NP_913378 Oryza sativa NP_913380 Oryza sativa NP913847 Persea americana P05522 Phaseolus vulgaris AAC78504 Pisum sativum JC7226 Pisum sativum T06770 Populus alba BAA77239 Populus alba BAB39482 Prunus persica CAA65597 Pyrus communis BAC22690 Sambucus nigra CAA52343 Triticum aestivum AAM13693 Fern: Ceratopteris richardii BQ087516 Lycophyte moss: Selaginella lepidophylla BM402464 Gnetophyte: Welwitschia mirabilis CK766010 Welwitschia mirabilis CK744630 Welwitschia mirabilis CK746704, CK766854 Cycads: Zamia furfuracea CB095306 Cycas rumphii CB090528 Cycas rumphii CB089731 Cycas rumphii CB090210 Cycas rumphii CB090846 Cycas rumphii CB091368 Cycas rumphii CB088531 Coniferales: Cryptomeria japonica AU299242 Cryptomeria japonica BP175713 Pinus taeda BQ702435, BQ198340 Pinus taeda CF399275, CF391865, BG039030 Pinus taeda CF479673, CF668810, BG040440, BQ702998, CF663991, BF516953, BG039288, BF517966, CF663920, BF778137, BQ695743 Pinus taeda CF476183 Pinus taeda BQ701766 Pinus radiata T10734 Pinus radiata T46610 Bryophyte mosses: Physcomitrella patens BJ166360 Physcomitrella patens BJ188281 Physcomitrella patens BJ584715 Physcomitrella patens BJ589489 Physcomitrella patens BJ592271 Tortula ruralis CN204816 |