Locus
|
Name
|
Use
|
Sequence (5’3')
|
Citation
|
18S
|
18e-s
|
Amp/Seq
|
ctggttgatcctgccagt
|
1
|
18S
|
18p-c
|
Amp/Seq
|
taatgatccttccgcaggttcacct
|
1
|
18S
|
18S1.2f
|
Seq
|
TGCTTGTCTCAAAGATTAAGC
|
2
|
18S
|
r1138
|
Amp/Seq
|
GTTAGAGGTTCGAAGGCG
|
3
|
18S
|
f1094
|
Amp/Seq
|
GGATCGTCGCAAGACGGACAGAAG
|
3
|
28S
|
rD4.2b
|
Amp/Seq
|
CCTTGGTCCGTGTTTCAAGACGG
|
2
|
28S
|
rD5b
|
Amp/Seq
|
CCACAGCGCCAGTTCTGCTTAC
|
2
|
28S
|
ZX1
|
Amp/Seq
|
ACCCGCTGAATTTAAGCATAT
|
4
|
28S
|
OP2
|
Amp/Seq
|
cagactagagtcaagctcaacagg
|
5
|
28S
|
ZR1
|
Seq
|
gtcttgaaacacggaccaaggagtct
|
5
|
EF-1
|
Cho10(mod)
|
Amp
|
ACRGCVACKGTYTGHCKCATGTC
|
6
|
EF-1
|
Cho10rev1
|
Amp/Seq
|
AGCATCDCCAGAYTTGATRGC
|
7
|
EF-1
|
efa747
|
Amp/Seq
|
CCACCAATTTTGTAGACATC
|
8
|
EF-1
|
efs372
|
Amp/Seq
|
CTGGTGAATTTGAAGCYGGTA
|
9
|
EF-1
|
for1deg
|
Amp/Seq
|
GYATCGACAARCGTACSATYG
|
6
|
Literature Cited for Table S2
-
Halaynch K, Lutz RA, Vrijenhoek RC (1998) Evolutionary origins and age of vestimentiferan tube-worms. Cah Biol Mar 39: 355–358.
-
Whiting MF (2002b) Mecoptera is paraphyletic: multiple genes and phylogeny of Mecoptera and Siphonaptera. Zool Scr 31: 93–104.
-
Sequeira AS, Normark BB, Farrell BD (2000) Evolutionary assembly of the conifer fauna: Distinguishing ancient from recent associations in bark beetles. Proc R Soc Lond B Biol Sci 267: 2359–2366.
-
Van der Auwera G, Chapelle S, De Wachter R (1994) Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phylogeny of the Oomycetes. FEBS Lett 338: 133–136.
-
Mallatt J, Sullivan J (1998) 28S and 18S ribosomal DNA sequences support the monophyly of lampreys and hagfishes. Mol Biol Evol 15: 1706–1718.
-
Danforth BN, Ji S (1998) Elongation factor–1alpha occurs as two copies in bees: Implications for phylogenetic analysis of EF–1alpha sequences in insects. Mol Biol Evol 15: 225–235.
-
McKenna DD, Sequeira AS, Marvaldi AE, Farrell BD (2009) Temporal lags and overlap in the diversification of weevils and flowering plant. Proc Natl Acad Sci USA 106: 7083-7088.
-
Normark BB, Jordal BH, Farrell BD (1999) Origin of a haplodiploid beetle lineage. Proc R Soc Lond B Biol Sci 266: 2253–2259.
-
McKenna DD, Farrell BD (2005) Molecular phylogenetics and evolution of host plant use in the Neotropical rolled leaf 'hispine' beetle genus Cephaloleia (Chevrolat) (Chrysomelidae: Cassidinae). Mol Phylogenet Evol 37: 117–131.
|