In this work, we implemented a procedure which assigns identifiers to protein sequences from multiple sources; only sequence names reported by the non-redundant Swiss-Prot database were used directly; for protein sequences obtained from other databases (TrEMBLE, PIR, GenBank, etc.), provisional protein sequences identifiers were assigned. They included a SwissProt - like identifiers (GENE_ORGANISM) marked with a lower-case letter “t,” followed by the accession number assigned by the database (GenBank, PIR, TrEMBLE, etc.). In this way, the names used can be easily referred to the original database source.
Archaea
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Macrofamily II
MDR
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Macrofamily I
MDR
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Macrofamily III
MDR
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Archaeoglobus fulgidus
Euryarchaeota; Archaeoglobales;
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--
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ADHt_ARCFU_O28179
(PDH Fam)
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--
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Methanobacterium thermoautotrophicum
Euryarchaeota; Methanobacteriales;
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--
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--
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--
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Methanococcus jannaschii
Euryarchaeota; Methanococcales;
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--
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--
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--
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Pyrococcus abyssi
Euryarchaeota; Thermococcales;
|
--
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TDHt_PYRAB_CAB50292
(PDH Fam: TDH)
|
--
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Pyrococcus furiosus
Euryarchaeota; Thermococcales;
|
--
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TDHt_PYRFU_AAL81115
(PDH Fam: TDH,
not included)
|
--
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Pyrococcus horikoshii
Euryarchaeota; Thermococcales;
|
--
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ADHt_PYRHO_BAA29746
(PDH Fam: TDH)
|
--
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Haloferax volcanii
Euryarchaeota; Halobacteriales;
|
--
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ADHt_HALVO_AAB71801
(PDH Fam: FADH)
|
--
|
Halobacterium sp. NRC-1
Euryarchaeota; Halobacteriales; Halobacteriaceae; Halobacterium.
|
--
|
ADH2t_HALSP_AAG20655
(PDH Fam: FADH)
VNG1023Ct_HALSP_AAG19435
(PDH Fam)
GDHt_HALSP_AAG18991
(PDH Fam: GDH archaea)
|
ADH4t_HALSP_AAG20032
(QOR Fam: CCAR related)
QORt_HALSP_AAG19273
(LTD Fam: AADH/LHD related,
probable horizontal gene transfer)
|
Thermoplasma acidophilum
Euryarchaeota; Thermoplasmales;
|
ADHRt_THEAC_CAC11970
(Y-ADH Fam: Broad ADH)
ADHRt_THEAC_CAC12437
(Y-ADH Fam: Broad ADH)
|
DHSOt_THEAC_CAC11883
(PDH Fam)
DHG_THEAC
(PDH Fam: GDH archaea)
|
--
|
Aeropyrum pernix
Crenarchaeota; Aeropyrum.
|
ADH1t_AERPE_BAA81251
(Y-ADH Fam: Broad ADH)
ADH2t_AERPE_BAA80556
(Y-ADH Fam: Broad ADH)
|
ADH3t_AERPE_BAA80235
(PDH Fam)
|
--
|
Sulfolobus solfataricus
Crenarchaeota; Sulfolobales;
|
ADH10t_SULSO_AAK41665
(Y-ADH Fam: Broad ADH)
ADH3_SULSO
(Y-ADH Fam: Broad ADH)
ADH4t_SULSO_AAK41537
(Y-ADH Fam: Broad ADH)
ADH7t_SULSO_AAK42584
(Y-ADH Fam: Broad ADH)
ADH5t_SULSO_AAK41859
(Y-ADH Fam: Broad ADH)
ADH2t_SULSO_AAK41061
(Y-ADH Fam: Broad ADH related)
ADH8t_SULSO_AAK42630
(Y-ADH Fam: Broad ADH related)
ADH13t_SULSO_AAK42983
(Y-ADH Fam: Broad ADH related)
|
GDHt_SULSO_CAA09918
(PDH Fam: GDH archaea)
ADH1t_SULSO_AAK40795
(PDH Fam)
ADH3t_SULSO_AAK41467
(PDH Fam)
ADH9t_SULSO_AAK42635
(PDH Fam)
ADH11t_SULSO_AAK42827
(PDH Fam)
|
ADH6t_SULSO_AAK42487
(QOR Fam: CCAR related)
ADH12t_SULSO_AAK42913
(QOR Fam: CCAR related)
|