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Identified proteins as members of mdr superfamily


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1Identified proteins as members of MDR superfamily

In this work, we implemented a procedure which assigns identifiers to protein sequences from multiple sources; only sequence names reported by the non-redundant Swiss-Prot database were used directly; for protein sequences obtained from other databases (TrEMBLE, PIR, GenBank, etc.), provisional protein sequences identifiers were assigned. They included a SwissProt - like identifiers (GENE_ORGANISM) marked with a lower-case letter “t,” followed by the accession number assigned by the database (GenBank, PIR, TrEMBLE, etc.). In this way, the names used can be easily referred to the original database source.

Below protein name, family and subfamily to which each protein belong is indicated between parenthesis. Subfamily is indicated only if the protein can be unambiguously assigned to one subfamily.
Table S1. Proteins that belong to MDR superfamily

Archaea

Macrofamily II

MDR


Macrofamily I

MDR


Macrofamily III

MDR


Archaeoglobus fulgidus

Euryarchaeota; Archaeoglobales;



--

ADHt_ARCFU_O28179

(PDH Fam)



--

Methanobacterium thermoautotrophicum

Euryarchaeota; Methanobacteriales;



--

--

--

Methanococcus jannaschii

Euryarchaeota; Methanococcales;



--

--

--

Pyrococcus abyssi

Euryarchaeota; Thermococcales;



--

TDHt_PYRAB_CAB50292

(PDH Fam: TDH)



--

Pyrococcus furiosus

Euryarchaeota; Thermococcales;



--

TDHt_PYRFU_AAL81115

(PDH Fam: TDH,

not included)


--

Pyrococcus horikoshii

Euryarchaeota; Thermococcales;



--

ADHt_PYRHO_BAA29746

(PDH Fam: TDH)



--

Haloferax volcanii

Euryarchaeota; Halobacteriales;



--

ADHt_HALVO_AAB71801

(PDH Fam: FADH)



--

Halobacterium sp. NRC-1

Euryarchaeota; Halobacteriales; Halobacteriaceae; Halobacterium.



--

ADH2t_HALSP_AAG20655

(PDH Fam: FADH)

VNG1023Ct_HALSP_AAG19435

(PDH Fam)

GDHt_HALSP_AAG18991

(PDH Fam: GDH archaea)



ADH4t_HALSP_AAG20032

(QOR Fam: CCAR related)

QORt_HALSP_AAG19273

(LTD Fam: AADH/LHD related,

probable horizontal gene transfer)


Thermoplasma acidophilum

Euryarchaeota; Thermoplasmales;



ADHRt_THEAC_CAC11970

(Y-ADH Fam: Broad ADH)

ADHRt_THEAC_CAC12437

(Y-ADH Fam: Broad ADH)



DHSOt_THEAC_CAC11883

(PDH Fam)

DHG_THEAC

(PDH Fam: GDH archaea)



--

Aeropyrum pernix

Crenarchaeota; Aeropyrum.



ADH1t_AERPE_BAA81251

(Y-ADH Fam: Broad ADH)

ADH2t_AERPE_BAA80556

(Y-ADH Fam: Broad ADH)



ADH3t_AERPE_BAA80235

(PDH Fam)




--

Sulfolobus solfataricus

Crenarchaeota; Sulfolobales;



ADH10t_SULSO_AAK41665

(Y-ADH Fam: Broad ADH)

ADH3_SULSO

(Y-ADH Fam: Broad ADH)

ADH4t_SULSO_AAK41537

(Y-ADH Fam: Broad ADH)

ADH7t_SULSO_AAK42584

(Y-ADH Fam: Broad ADH)

ADH5t_SULSO_AAK41859

(Y-ADH Fam: Broad ADH)

ADH2t_SULSO_AAK41061

(Y-ADH Fam: Broad ADH related)

ADH8t_SULSO_AAK42630

(Y-ADH Fam: Broad ADH related)

ADH13t_SULSO_AAK42983

(Y-ADH Fam: Broad ADH related)



GDHt_SULSO_CAA09918

(PDH Fam: GDH archaea)

ADH1t_SULSO_AAK40795

(PDH Fam)

ADH3t_SULSO_AAK41467

(PDH Fam)

ADH9t_SULSO_AAK42635

(PDH Fam)

ADH11t_SULSO_AAK42827

(PDH Fam)




ADH6t_SULSO_AAK42487

(QOR Fam: CCAR related)

ADH12t_SULSO_AAK42913

(QOR Fam: CCAR related)


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