Additional file 4
a)
Subclass
|
Class
|
Blocks
|
Corr.
|
p-value
|
z-score
|
7SK
|
RNA
|
14
|
0.752
|
0.00118
|
2.49
|
MER54A
|
LTR/ERVL
|
49
|
0.531
|
9.32E-05
|
1.601
|
MLT2B2
|
LTR/ERVL
|
151
|
0.406
|
2.17E-07
|
1.130
|
MIRm
|
SINE/MIR
|
151
|
0.321
|
5.65E-05
|
0.814
|
LTR67
|
LTR/ERVL
|
109
|
0.310
|
0.000733
|
0.803
|
MER171
|
LTR/ERVL
|
200
|
0.237
|
0.000712
|
0.502
|
L3b
|
LINE/CR1
|
534
|
0.215
|
4.92E-07
|
0.421
|
MARNA
|
DNA/Mariner
|
143
|
0.204
|
0.014171
|
0.381
|
MER121
|
Unknown
|
192
|
0.200
|
0.005306
|
0.363
|
|
|
|
|
|
|
Repeat subclasses of strong rate correlation between primate and rodent. P-values are those from standard Pearson correlation t-tests. Although MARNA has a slightly larger p-value, it is listed for comparison with other papers.
Criteria: z>0.3 or p-value better than 0.001.
b)
laurasiatheria- rodent
Subclass
|
Class
|
Block
|
Corr.
|
p-value
|
z-score
|
Charlie8
|
DNA/MER1_type
|
52
|
0.588
|
4.5E-06
|
1.190
|
MER103
|
DNA
|
57
|
0.412
|
1.4E-03
|
0.630
|
L1ME4a
|
LINE/L1
|
364
|
0.429
|
2.0E-17
|
0.667
|
MER121
|
Unknown
|
152
|
0.421
|
6.5E-08
|
0.754
|
MARNA
|
DNA/Mariner
|
121
|
0.371
|
2.7E-05
|
0.498
|
L3b
|
LINE/CR1
|
395
|
0.345
|
1.4E-14
|
0.491
|
L1M5
|
LINE/L1
|
391
|
0.342
|
3.9E-12
|
0.401
|
L3
|
LINE/CR1
|
1959
|
0.324
|
2.2E-49
|
0.349
|
|
|
|
|
|
|
Repeat subclasses of strong rate correlation between rodent and laurasiatheria. The z-score here is defined as  where  is a correlation of a repeat subclass(sc),  a genome wide rate correlation, and  the standard deviation among the rate correlation among all the repeat subclasses. This z-score is to qualitatively rank the strength of these correlations. |
Yüklə 114 Kb.