CTAGGTTTTCCACATCGGATATACCTAGTTCCTCTATTCACTCTGTTGACTATACCACTA
GTGTTCCACACCCAATCTACACTAGCAGTCAACATGAACAAAGACAGGAAGAGAAGGAAC
CTTCTCCTCCAACTTCTCCTACATTTTCTGCTGTCACTGAAAATGTAATAAATGTCCTTG
AAAAAGTTTATGAATTAGATAAAACTCTTCTTCATAATGATTTTTATTCTGATACTAATA
AAGAAAAAAGACTTTGGTTTTTTAAACATTTCATAAACCAAAGAAAAGAAATTCAACAAA
TTTATTATGAGTTTGTAAAATTGCATAAAGTCCATATATTATTCTTTGATTGGTTTAAAA
TGTATGCTTCGGATAACAATATCACTTATCCCTTTAAAGAATCAAATCCCATTACTGTTA
GGAAGAAAATCACTGAATGGAATCTTTCTGATAGTGATAGAACTATAGAATTTGAACATC
CTCCACTAAGGAGTTTGACCATTGACCATGGTGAACCTCCTGTTGAGATTAAAGCCTCAC
CCTATAAAATCCATAAACCAAATGATCCAGAGACAAATTTAGGTAGCATTATCCAACAGA
ATAATTTCTGTAATGCTAACCTAAATACAATAGGAAAACAGTTGACTAGGATAGAAAACC
AATTCCAGAAGTCAACCATAGCTGTTTCTCCTATTACATCAAAATCGGATTCTGACAAAA
AGCTTAAAGAGCCTATTTTCAAACCTTTTCAGGTTTCGAAAACTAGTCAAAAGTTTGTTC
AAGAGTCAAAATCAGATTTTGCTAAAGCCATTAGGGAACAACTAGATAGAATAGAAGCTT
CTTCTTCTTCTTCTAGTAAAATCCAAATAGCCCCAGATAGTGCCCAATCTAGTAAGATTG
GTGTACTAGAACAAGACAATATGTCTATAGCCTCTTCTGATATAGAAGCCTTTAAAGAAG
AACCTGTTCCTAAAACCAACAAAATCCATTGGGAATTAGCCCTACCTACTGTCAAGTCTC
CACCTGACTTAGCCATAGACAACAGACCTAGTGCATTAAACCAATCACGATTTAATGCAT
CCTCTGTCTATGAGTGGAATATTGATGGTATGTCTGAGTATAACATCCTAGGATTGTTGC
AACAGATGACCATGGCAGCTAATGCCTATAAAACCCAGTCGGGAACTTCTGACAAAGCCA
TTGCAGAAATTCTCATTGCTGGTTTTACTGGTCAACTTAAAGGTTGGTGGGATCATCTTC
TCACCAAACAGCAACAATTAGATATTCTAAATTCTATTCAAACAGATGAGAATGGAGCCC
CCATCCTTGATGAATTCAATAGCCCAATTCAGGATGCAGTTGCTACCCTGATTCTGACTA
TATCCCTTCATTTCATAGGTGATCCTTCACACCTTAGGGATAAGAATGCTGAGTTACTAC
ACAACCTAAGATGTAGGAAACTTAGTGAATTCCAAAGCTATAAAACCACATTCTTTACCA
GACTCTTCCTTAGGGATGATGCAAATCATATAACTTGGAAGGAAAAATTCCTTGCAGGTT
TACCTACCCTATTAGGAGAAAAGGTTAGGAATTCCATTAAAGCCCTTTATGACAATCGTA
TTCCTTATGACGAACTCACCTATGGTGAACTAGTCAGTTTTATTAACAAAGAAGGATTAA
AGATTTGTCAAGACTTGAAATTACAGAAACGACTAAAATGGGAACTTAGAAAATCTAAAC
AAGAATTAGGCAGTTTCTGTAAACAGTTCAATTATGACCCCTTTAAAGCCTCGACTTCTA
AGGATTGTAATGGTAAGTGTTCTTCGAAACCTTACAAGAAACATTACAAATCAAAAAGCC
ATAGGAAACCCTTCCATGACTTTAGAGAACCTTCCTATAAGAAACCCTCGAAGCCTTATA
AGAAACCAAATTTCTCTAAAAAGAAAGACTTTAAAGCCAAAACAAAAACCCCTTTTAATT
ACAAAGAAGCCACATGTTTCAAATGTGGAAAGAAAGGCCATACTGCAAAATTTTGTAGAA
TGAACAGAAAGCTCCATGAGCTTGGCCTTGATGAAGAAATACTTTCTAAAGTAGCCCCTT
TACTTATAGAGTCTTCTGACTCTGAGTCTTCCATGACGGGAGACAGTGAGCCTCTACAGA
TTGATGAGTTAAATGACTCTGAATCTGTATCCTCCAGTGATTCTGAAACAAGTGACACAG
AATCCTATTTAAAGAAAATCAATGTGTTGACTAAAGAACAAGAAACTTTTCTTGAACTAG
TTAAACATATTTCTGATCCAAATCTCCAAAGAGAGTACCTTGATAAACTTCTAAAAACCT
TAGAACTTAATAAAGCAGAAACTTCTAAAGTCCCTACCATTAAAAAGAATACTTATGATC
TCACTGAAATCTTGGATAAAAAGAAAACAAAGAAAACAACTCCTAATATCCAAGATCTTC
AAAAAGAAATAAAAGAAATTAAACTTGAAATAAAAGAATTAAAAGAAAAACAAAAAAATG
ATTCAGAAACTATCCAACTTTTATTACAAAAACAATTAGAAGAGAATTCTGATAAAGAAT
CAGAATCTGATGGTGATAATGAACAAAACCTTGAAAACATTGAATCTATACCCAATGATT
TTCTTTTTGTTTTAAAACAAATCACCACAAGAAAATATTTGATTAAAATCACTTTAATTT
TTTCTAAAGATTTTGAAATTGACACCATTGCCCTTTTTGACACTGGTGCTGATTTAAATT
GCATTAAAGAAGATATTGTCCCAAAAAGATTTCATGAAAAAACTAATGAAAGACTTTCAG
CCGCTAATAATTCAAAATTAAAAGTCAAATCTAAAGTTGACGCCTCAATTCACAACAATG
GTTTTGAATTCAGGACTTCCTTTCTTCTAACAAATGATATACATCATACTGTTATTTTAG
GAACTCCCTTTATAAATCTTATTACTCCATATACTGTCAACTATGATAGTATATCTTTTA
AAGCAAAAAACAAAAAACTAATTTTTCCTTTTATTGAAAAACCTAAAACAAGAAATTTGA
ATATTGTTAAAGCTTGTTCTGTTTATCAGAACCAAATCAATACACTCCTCAAATCAAAAC
AAAATGACCTGATTTGTTTAAAAAAGGATTTGAGTTTACAAAGAATCGAAAACCAATTAC
AAAATGAATTTGTAAAAAGAAAAATCTCTGATTTTAAAGACCTCATTGAAAAAGAAATAT
GTGCGGATCTACCATCTGCTTTTTGGAACAGAAAACAACATTTGGTTGATTTGCCTTATG
AAAACTCTTTTGATGAAAAACAAATACCTACCAAAGCCCGTCCAATCCAAATGAACATGG
AATTGGAACAACATTGCAAAAATGAGATAAAAGATTTAGAATCTAAAGGACTCATTGTCA
AATCTAGGTCTCCATGGTCTTGTGCCGCTTTTTATGTCAACAAAAATTCTGAGATAGAAA
GAGGAACACCTAGATTGGTAATAAATTATAAACCCCTTAATAAAGCATTAAAATGGATTA
GGTATCCTATACCTAATAAAAAGGATTTGCTCCAGAAACTACATTCTGCATTCATTTTTT
CAAAATTTGATATGAAATCTGGATTTTGGCAAATTCAAATTCATCCCAAAGACCGTTATA
AAACTGCTTTTACTGTTCCTTTTGGACAGTATGAATGGACTGTAATGCCATTCGGATTAA
AGAATGCACCTTCAGAATTTCAAAGAATTATGAATGATATTTATAATCCTTTCTCTGAAT
TTTGCATTGTTTATATTGATGATGTGTTGATCTTTTTCCAAACAATTGATCAACATTTCA
AACATTTAAAGACTTTTTATCTTGCCACTAGAAAGGCTGGTCTAGCCATTTCTAGTTCTA
AAGTTTCCTTGTTCCAAACAAGAATTAGGTTCCTTGGTCATTACATTTCCAAAGGAACCA
TAACTCCTATTGAAAGATCTCTTGCATTTGCAGACAAATTTCCTGATAAAATCCTTGATA
AAACCCAATTGCAAAGATTTCTAGGTAGTTTAAATTATGTTCTTGATTTTTGTCCTAATA
TCAATAGGATCTCAAAACCATTGCATGATAGATTAAAGAAAAATCCTGTTGCATGGACTG
ATGAACACACTAAAGCTGTTAAACAAATAAAGAATTCTGTTAAAAATATTCCATGTTTAT
TTCTTGCAAATCCTGCATTACCTAAAATTGTTGAAACTGATGCATCAGATTTAGGTTATG
GAGGAATACTAAAGCAAGTTGATAATAATAAAGAACAAATAGTACAATATGTTTCTGCTC
ATTGGAATGAATGTCAAAAAAACTATTCTACTATCAAAAAAAAAATTCTATCTATAATTC
TATGCATATCGAAATTTCAAAGCGATCTGTTAAATAAAATAAAAAATACTTAGAATTGAT
TGCAAAGCTGCAAAACATGTTTTAGAAAAAGATGTTCAAAACATTGCATCAAAACAAATT
TTTGCACGATGGCAAGCCATTTTAAGGGTTTTTTATTTTGACATTGAGTTTATTAAAAGA
GATACAAATTCTATCCCTGATTTTCTAACCAGGGAATTCCTTCAAAACAGATAAATACCG
CCCAAAAGGAAAGACAAAGGGAAAGGGATCCTCAAAGACCCTGTGTCCCAGACACCTTCT
AAAGCCTCCCAATCTTCCCCTCCTAAAGAAAAATTACTTTCATCAGTCATGCCAATCAAA
TCATTGATCGATATGATTGAAGATGAAGAAGCCAAATCTAAAGCCATCGCCCTTCAAGAA
CAGGTAAATGAATGGATGAAATCCATTTCTAAATCCCCTGAACTTATGCTTGCATTACAA
AGCTTTTCTCAAAGTCAGATTTCCCCTAAAGAAGAAAAATTCATTTCTAAAGAAATTTCT
AAAGCCTCTTCACAAAATGTAGTTCTTTCTGGAGAAAGTTCATCATCCCATATTGTTCTT
TCCCAAACAAAGCTTTCAAAGAAAACTTCAGATTGGTATGATAAAGCCCATTTTCAAAAT
GTTTTATCCATGGAAGATGGTTTTTACCACACTGATCCTTTTCAAGCAATTTCAAACATT
TTCCCTATGGGATGGTTTTTCAAACCTTGGGACTTAACAAAGCCCCAGTGTTATTATCAA
AGCATTTTGGAGTCTACTGAGTCTGTAAAATTTAAACATTTCTTCCTTAGCGAAGCCCAT
ACAGAACCAGCCTACTCCACTGCCACTATCCTAAAGGTTTTGAGCCCAAAACAATAGGGA
GACCAACTCCATAAACTAAAACCCTTCCCCGCCAATTTTCAAATGCGTTTGCCACACTGC
CTGTCCTATTCTTACTGGGACTATCAACAGGCCTGGTTTAACACATTTTTTATCCAAAAC
TCAAAAAGAACCCATTCTTGGTTATTTTTCTTCAACTCAAAAATAACCGTCCAAAGCCTT
CCAAATTGGTTCTAGCAGTGGTGGAATTATTTTGGCCCATGCCCTGAAATCCTCACCCAA
AATGCCATCCAGTGCCTAAATCTTTTTAAAACCCATTATGTACCTACAGAATCTGAGAAA
CGATTTCCTCCTTTTCTTTGCTTCTGTACAAATTTCTTTCTTCCCTGGGTATGGATGTGG
AACTTCCGATACCATCCACAAGATGCCCAACTAATTTTACAAAGAACCTTTGAAGTCAAA
TGGTGGTCAAAATTTGATGAACAGTCCAAATTGACTGTTAACATGATCGAAAATTGGTTC
TCCTCTAAAGGCCTTCTACAACCGACCATCAAAGACATTAAAGCCCAAGGGACCTTCCTT
ACCCAGAAATCCAAAGCCCAATCTCTTTTGGCCAGTGCCAAAACAGAAGAAGAATATTTC
AAAGTCATGGAACAGCTTCTCGCATCGAGATCTGAACCATCAGTTGCAAGTTCCGGATCA
AGCTCTTCTGGAGAAGCCACGCCATTCATCTCCCTTGGAGATGAGAATGAAGATGATTAC
TTCGGCATCTTTCCTCCTGTAAAGCATTGTTAAAGAATT
>CclemV_scCc5 [endogenous-virus-name=Citrus clementina virus] [strain=sequence cluster Cc5] [host=Citrus clementina] [moltype=genomic DNA] 7538 bp
TGGTATCAGAGCCAAGGGGAGGATAGTGTAAAGCAGTTTATAGTTTCGTGTTTAAAAAAC
TTGTGTTTTATTTTGAAGTTTTGTTGTTTGGTGAATTTTTACTGGTAGTAAGTCCCGCCA
TAGGATAAGGACATCCGTTTAGGGCTGTAAACCCATACCTGTAGCCATTCTGACAAAGCC
ATAGATAGACCATAGGTTTCTACTCATGGACCCTATACACTGTAGAACATCATCCTTTTC
TAGCTCTTCTTCCGGGAAGACTAGTGATTCAAAGCATGTTGTGAGTTCAGAGGAATTCAT
TATTGAGAACTTTGATAAAGCAATTGATTGTTGGGAACTTCCAAAAATTTCCAAAGAAAA
GATTTACAAAACAAAAATGCTCGATCTTTTAAAACATGATTATATTATAAAGACTGAAGA
ACGTGATATAACTCTTTCAGAGCCTTTTGAAACAATTTATTTGTTTTCAGAGAAATCTTT
AAAGAAATTAAAAGAAAAGAATTTCAAATACATTCACATTGGTTTAATCCAAGTAGGAAT
AAAACCTTTGACCAAAGAAGGCTTGGATACTTCTATCCTTGCTGTCCTTAGAGATGGTCG
ATTCATCTCTTTTGATGATTCTTTACTAAGTAGTATTGAATCTAGTCTATGTAAAGGTCC
CATATCTTTTGATTGCTATCCAAATATAACAATTTCTCTTAAAGACAAAAATATTTTAAA
AAGCATGATTTTACAAATTAAAACCCATAATTATAATATGATTAAGGGATCCATCCCAGT
TGCATTAATTTTTAAAATCTCTTACAAAGCCATGATTTCTGCATTTAGCACACAGCATAA
ATACCAGTCAAAAAGAGATGAAACCCTTCTCTTGCAGACTGATCTGTCCAAAGCAAACAC
GGTCATTCCCAAACCAATCCAATGGAAAGATGTAAATCTTCCAGAGGAATGGATCCTTGA
AGGAGCCGCTCCACCAGCGATTCCGAAACAACTTGAGCCCAATACAGAGTTGCAAAATGT
GACTCAGTATTCCGATGGTAAAGTCAAACTATCGTTCAGAAGATCTACCTCATCCAGATT
TTCTGATAAAGCTTCATGCTCAAGTATTCCTTCCTTAGAAAGGAAATTTACAAAAGTCCC
TTCAGTAATAAATCTTCCTTTCCAAAGTCAACCTAGGTTCTCTACTTCAGATGTACCTAG
TACCTCCATCCGATCAGTTGATTACACCACTAGTGTTCCACATCCAATCTACACTAGTAG
TCAACATATTCAAAGTCAGGAAGAGAAGGAACCTTCTCCTCCAACATCCCCTACATTTTC
TGCAGTCACAGAAAATGTCATTAATGTCATCGAAAAAGAATTTGAATTGGATAAAACTCT
TTTACATAATGATTTTTATTCTGATTTAAACAAAGAAAAAAGACTTTGGTTTTTCAAACA
CTTTTTAAACCAAAGAAAAGAAATCCAACAATTTTATTATGAATTTGTGAATCTTCATAA
AGTTCATATATTGTTTTTTGATTGGTTCGAAATATATTCCTCTAATAACAACATTTCTTA
CCCTTTCAAAGAGTCAAACCCTATTACTATTAGGAAAAAGACCACTGAGTGGAAACTCTC
CGATAGTAATAGAACAATCGATTCTGAGCATCCACCTCTCCGGAGTATAACCGTTGACCA
CGGCGAACCTCCTATAGACATTAGAGCTTCACCTTACAAAATCCCTAAACCAAATGATAC
TGATAGTAATTTAAGTAGTATTATTCAGCAGAATAATTTCTGCAGTACTAACTTAAATAC
TATAGGAAAACAGTTGACTAGAATAGAAAACCAATTTCAACAGTCAACCATATCTGTTTC
TCCTAGTCAAAAGCCTATCCCTTCAAAATCAGATTCTGATAAAAAGCTTAAGGAACCTAT
TTTCAAACCCTTCCAGGTTTCGAAAATTAGCCAAAAGCTTGTCCATGAATCAAAATCGGA
TTTTGCCAAAGCCATTAGAGAACAACTAGATAGGATAGAAGCTGCTTCTTCCTCATCTAG
TAAAGTTCAAATAGCTCCTGATACTCCTCAATCTAGCAAGATTGGAGTATTAGAACAAGA
CCAGGTTTCTATTGCCTCTTCTGACTTAGAAGCCTTTACCGAAGAACCTGTTTCTAAAGC
CAATAAAATCCATTGGGAACTTGCTATCCCTACTTCCAAATCTCCACCTGATTTGACTAT
AGACAACAGGCCTAGTGCATTAAACCAAGCTCGATATAATGCATCCTCTGTCTATGAGTG
GAATATAGATGGAATGTCTGAGTATAACATTTTAGGTGTATTGCAACAAATGACCATGGC
AGCCAATGCCTATAAAACCCAATCAGGAACTTCTGACAAAGCCATTGCAGAAATCCTAAT
TGCAGGTTTTACTGGTCAACTCAAAGGATGGTGGGATCATCTTCTCACTAAATTGCAGCA
ATTAGACATTTTTAATGCCATCCAAACTGATGAGAATGGTGCTCCCATTCTTGATGAGTT
TAATAACCCTATTCAGGATGCAGTTGCTACCCTGATTTTAACCATTTCCCTTCACTTCAT
AGGTGACCCTTCTCACCTTAGAGACAAAAACGCCGAGTTACTACACAACTTAAGATGTAG
GAAACTCAGTGATTTCCAAGATTACAAAACCACTTTCTTTACTAGACTCTTCCTTAGGGA
TGATGCAAATCATGTAACTTGGAAGGAAAAATTCCTTGCAGGTTTACCTACCCTATTGGG
AGAAAAGGTTAGAAATTCCATCAAAGCTCTCTATGACAATCGTATTCCTTATGACGAGCT
CACTTATGGTGAACTAGTCAGTTTTGTCAATAAAGAAGGTTTAAAGATCTGTCAAGATTT
GAAATTACAGAAACGTCTGAAGCAGGAGCTTAGGAGATCTAAGCAAGAATTAGGCGGTTT
TTGTAAACAATTCAATTATGACCCCTTTAAAGCTTCTACTTCCAAAGATTGTAATGGTAA
GTGTTCTTCAAAACCTTACAAGAAATATTACAAATCTAAAAGCCATAGGAAACCCTTTCA
CGAGTTTAGAAAACTTCCTTATAAGAAACCTTCGAGGCCTTATAAGAAACATAGTTTCTC
TAAAAAGAAAGAGTTTAAAGCCAAACCTAAAACCCCATTCAACTTCAAAGATGCCACTTG
TTTCAAATGTGGTATGAAAGGTCATACTGCAAAGTTTTGCAGAATGAACAAGAGACTCCA
AGAGCTTGACCTCAATGAGGACATCCTTTCCAAAATAGCCCCTCTTCTTGTAGAGTCTTC
TGACTCTGAGTCTTCCATGTCAGGAGACAGTGATCCTCTTCAGGTCGATGAGTTATTTGA
CTCAGATACCTCTGCATCTAGCAGTAGCGATTCTGATTCGGATTCCTATTTAAAGAAAAT
CAATGTTTTGACTAAAGACCAAGAAATTTTTCTTGAACTTGTAAAGCATATTTCAGATCC
AAATCTTCAAAAAGAATATCTTGATAAACTTTTGAAAACCATGGATTCTGACAAAGCCGG
AACCTCAACTGAAATCTCTAAGGTTCCAATTATTAAGAAGAATTCTTATGATCTTACTCA
AATTTTGGATAAAAAGAAAACAAAAAAGGCAGTTCCTAATATCCAAGATCTTCAGAAAGA
GATAAAAGAAATCAAATGTGAAATCAGAGATTTAAAAGAAAAACAAAAAAGTGATTCTGA
GACTATCCAACTTCTTTTACAAAAACAATTGCAAGAAAATTCAGACAATGAATCCAATCC
TGATGATGGTGAGGATATTAAAGTAGAAAACATAGAGTCTGTACCCAATGATTTTCTATT
TGTTTTAAAGCAAATCACCACAAGAAAGTATTTGATTAAAGTCACTCTCATCTTTTCTGA
TGATTTTGCTATGGACGCCATTGCCCTTTTTGACACTGGCGCTGATTTAAATTGCATTAG
GGAAGATATCGTCCCCAAAAGATTTCATGAAAAAACAAAAGAAAGACTTTCTGCCGCTAA
TAATTCAAAATTGAATGTTAGTTCCAAAGTTGAAGCCTCGGTTTACAATGATAAAATTGA
ATTTAAAACTTCTTTTGTTCTTACAAATGATATTCACCATGCTATCATTTTAGGAACCCC
TTTTATAAATCTTATTACCCCTTATGCTGTCAACTATGATGGTATATATTTTAAAGCAAA
ATCTAAAGACCTTGTTTTCCCGTTTATTGAGAAACCAAAAACTAGAAACCTAAACATTGT
CAAAGCTTGTTCTGTTTACCAAAAGAAAATTAATGCCATTCTTAAATCCAAACAAGATGA
TTTATTTTGTTTAAAAAAGGATTTAAATTTTCGTAGAATTGAGAGTCAACTCCAAAGTAA
TTTTTTACAAAGAAAAATTTCCGATTTCAAAAGTCTTATTGAAAGAGAAATATGTGCCGA
TTTACCATCTGCTTTTTGGGATAGGAAACAACATTTGGTAGATTTGCCTTATGAAAAGTC
GTTTGATGAAAAACAAATACCCACCAAAGCTCGTCCAATCCAAATGAATATGGAATTGGA
ACAGCATTGTAAAGATGAGATAAATGATCTTATTAACAAAAAGCTCATTGTAAAATCCAG
ATCACCTTGGTCTTGCGCCGCTTTTTATGTTAATAAAAATTCTGAAATTGAAAGAGGCGT
ACCTAGACTTGTAATAAATTACAAACCCTTGAATAAAGCTTTAAAATGGATTAGGTACCC
AATACCTAACAAAAAGGATTTGCTCCAAAAACTCTGTTCAGCTTTCATTTTTTCAAAATT
TGACATGAAGTCTGGTTTTTGGCAGATTCAAATTCATCCAAAAGATCGTTATAAAACTGC
TTTTACTGTTCCATTTGGACAATACGAATGGACTGTTATGCCCTTTGGTTTAAAGAATGC
ACCCTCGGAATTTCAAAGAATCATGAATGACATTTATAACCCCTACTCCGAGTTTTGTAT
AGTTTATATTGATGATGTGTTGATTTTTTCTCAAAGTATTGATCAACACTTCAAACATTT
AAAGACTTTTCATCTTGTTACAAAAAAGGCTGGCCTGGCTCTTTCAAGTACAAAGATTTC
ATTATTTCAAACAAAAGTCAGGTTCCTTGGTCACCATATTTCCAAAGGCACTATTACCCC
TATTGAGAGATCACTTTTGTTTGCGGATAAATTCCCAGACAAAATTCTTGACAAAACCCA
ATTACAAAGATTTCTTGGTAGTTTAAATTATGTTCTTGATTTCTGCCCTAATATCAATAG
GATGTCTAAACCTTTGCATGATAGGTTAAAAAAGAATCCTGTTGCATGGACAGAAGAACA
TACCAAAGTGGTTAGACTAATAAAGCAATCTGTAAAAAACATTCCTTGTTTATTTCTTGC
AAATCCTGCATTACCTAAAATTGTTGAAACCGATGCATCTGACATAGGTTATGGAGGAAT
TTTGAAACAAAGGGATAATGATAAAGAACAGATAGTTCAATATGTTTCTGCTCATTGGAA
TGACTGCCAGAAAAACTATTCTACTATCAAAAAAGAAATCCTTTCCATTGTTTTATGCAT
TACAAAATTTCAAAGTGATTTATTAAATCAAAAATTTTTACTTAGAATTGACTGCAAAGC
TGCAAAACATGTTTTAGAAAAAGATGTTCAAAACATTGCATCAAAACAAATTTTTGCACG
TTGGCAAGCTATTTTAAGTGTTTTTGATTTTGATATTGAATTTATTAAAGGTGACAAAAA
TTCTGTTCCTGATTTTCTAACTCGGGAATTTCTTCAAAACAGATAATGCCGCCAAAGAAG
AATAAAGGTAAAGCAGTTCTCAAAGACACTGGTTCCCAAGAACCTTCCAAAGAACCCCAG
TCAACCCCTTCTAAAGAAAAATTACTTTCTTCTGCCATGCCCATTAAATCTTGGATTGAA
ATGGTTGAAGAACATGGAGCCCAATACAAATCTATTTCTTCTGATGACCAAGTAAAGCAA
TGGATGAGTTCCATTACAAAATCACCTGAGCTCATGCTCGCCCTCCAAAACCTTTCTCAA
AGCCAAATTTCTCCCCAAAAAGAAATTGAAATTACAAAACCCTCTTCCCAAAATGTTGTT
GTCTCTGCTGAAAGCTCATCCTCCCAAATTGTGCTTTCTCAGCCAACACCTTCAAAGAAA
ACCTCCGATTGGTTTGATAAAACCCATTTTCAAAACATTCTTTCTCTAGAAGATGGATTT
TACCATTCTGATCCTTTTCAAAGCATTTCAAAGTTTTTTCCCAAAGGCTGGTTTTTCAAA
CCATGGGATTTGACAAAACCCCAGTCTTATTATCAAAGCATTTTGGAAATAACTGAATCA
GTTAAATTCAAACATTTCTTTCTTGACAAAGCCCATCCAGAACCGGCTTATTCAACGGCC
ACAATCCTCAAAGTATTGAGCCCAAATCAGTGGGGTGACCTACTCCACAATTGTAAAACC
TTCCCTCTAAATTTTGAAACCCGTTTACCACATTGTCGGACTTTTTCCTACTGGGATTAC
CAACAAGCATGGTATAACACCTTCTTTATCCAAAACCCTAAAAAATCCCACTCTTGGTTA
TTTTTCTTCAACACAAAGATAACCGTTCAAAGCCTTCCAAATTGGTTTCAGCATTGGTGG
AATCATTTTGGCCCAATTCCACAAATCTTATCACCAAACGCTACAAATTGCCTAAACCTC
TTCAAAGCCCATTATTTACCCTCTGTCTCAGAAAAAAGATTTCCCCCCTTTCTTTGCTTT
TGTGCAAATTTCTTTCTTCCTTGGGTTTGTTCGTGGAACCTACGTTTCCACAACCAAGAT
TCCCAAGTCATCCTTCAAAGAACCTTTAAAGTCAAATGGTGGTCAAAATTTGATGAACAG
TCCAAATTGACTGTCAACATGATCAAAGATTGGCTCTCCTCTAAAAACCTCCTACAACCA
ACCCTGGAAGCCTCTAAAGCCCAACAGACCTTCCTAACCCAAAAATCCAAAGCCCAGTCT
CTTTTGGCAAGCGCCAAAACGGAAGATGAGTATTTCAAAGCCATGGAACAGCTCCTCGCC
TCTCGATCAAAGTCCTCAGCCGCAGATTCCTCTGAAGATGAAGATGAAGATGTTGATGAT
GATGAAGAGCCTTTCATTTCTCTCGGAGACGATAATGAAGATGACTGTTTCGGCATTTTC
TCTCCGATAAAGCATTGTAAATAATTATTTGATTATTTACTTAAAAAAAAAAAAAAAAAA
AGAAAAAGAAAAAGAAAAAAGAGATGTATTTTCGGGTGGTCCCCTGGACACAAGTGAGAG
CGCACATGTCTCTTCACCCGTATTGTATTTTTCTACAAAGAGTCTACTATTCAAAGCTAC
GATCCAATTGTTACTGTGCACTTAAAATCCCGCTACAGTGAACAGTGCAACTTTCCAGAG
TTTACTGTGCACTTAAAATCCCGCTACAGTGAACAGTTTAAAGATTTTGTATATAAACCG
AGAGGAAGACTTAGACTCCTCAGGTTTTTCATTCCTCT
>CclemV_scCs1 [endogenous-virus-name=Citrus clementina virus] [strain=sequence cluster Cs1] [host=Citrus sinensis] [moltype=genomic DNA] [note=complete genome, mutations in ORF1] 7595 bp
TGGTATCAGAGCCAAGGGGAGGATAGTGTAATATAGTGTAGAGATTTTGTGTTTAAAAAC
TTGTGTTTTATTTTGAAGTTTTGTCGTGTGGTGAATCCTTTACTGGTAGTAAGTCCCGCT
TTAGGATAAGGATTTCCGCTTAGGGCTGTAAAACCATACCTGTAGCCATTCTGACAAGAC
CATAAATAGACCATAGGGTTTTACCCATGGACCCTCTACTCTGTAGAACATCGTCCTTTT
CTAGCTCTTCTTCCGGGAAGACTAGTGATTCAAAGCATGTTGTGAGTTCAGAAGAATTCA
TTATTGAGAACTTTGATAAAGCAATTGATTGTTGGGAACTTCCAAAAGTTTCTAAAGAGA
AAATTTACAAAACAAAAAAGCTTGATTTTTTAAAAAATGATTATGTTATAAAAACTGAAG
AAAGAGACATAACTCTTTCAGAGCCTTTTGAAACAATTCATTTGTTTTCAGAAAAATCTT
TAAAGAAATTGAAAGAAAAGAATTTTAATTACATTCATATAGGTTTAATCCAAATTGGAA
TAAAACCTTTGACCAAAGAAGGCCTGGATACTTCTATCCTCGCTGTCCTAAGAGATAGGC
GATTCATCTCTTTTGACGATTCATTGCTAAGTAGCATCGAATCCAGTCTATGCAAAGGCC
CAATTTCTTTTGATTGCTATCCAAACATAACAATTTCCCTTAAAAGACAAAAACATTCTA
AAAAGCATGATTTTACAAATTAAAACACATAATTATAAAATGATAAAGGGATCTATCCCA
GTTGCTTTAATCTTCAAAATTTCATATAAAGCCATGATCTATGCGTTTAGTACGCAACAT
AAATTCCAGTAAAAAAGAGATGAGACTCTTCTCTTACAGACTGATCTGTCCAAAGCCAAC
ACTATCATCCCAAAACCAATCCAATGGAAAGACGTCAATCTTCCAGAAGAATGGATTCTT
GAAGGAGCCGCTCCACCAGCAATTCCAAAACAACTTGAACCAAATACAGAGTTGCAAAAT
GTGACTCAGTATTCTGATGGAAAAGTCAAACTATCTTTCAGAAGATCTAATTCAACCAGA
TTTTCTAATAAAGAATCGTGCCCAAATACTCCTTCATTAGAAAGGAAATTTACAAAAATC
CCCTCAGTTATAAACCTTTCTTTTCAAAGTCAACCTAGGTTTTCAACCTCAGACATACAC
AGTACCTCTATACGCTCAGTTGACTACACCACAAAAGTTCCACACCCAATCTACACTAGC
AGTCAACATGAACAAAGACAGGAAGAGAAGGAACCTTCTCCCCCAACTTCCCCTACATTC
TCTGCTATCACAGAAAACATTATAAACGTTATCAAAAAAAATTTTGAACTAGACAAAAAT
CTCCTTCACAATAATTTTTATTCAAAAAAAAACAAAGAAAAAAAAATTTGGTTCTTCAAA
CACTTTTTGAACCAAAGAAAAGAAATCCAACAAACTTACTATGAATTTGTGAATCTGCAT
CAAGTTCATATACTGTTTTTTGATTGGTTCGAAATATATTCTTCTGACAACAACATCGAT
TACCCCTTCAAAGAGTCAAACCATATTACTATTAGAAAGAAGACTCCTGAGTGGAAACTT
TCTGATAATGATAGAACCATAGAATCTGAGCATCCACCTCTCCGGAGTATAACCGTTGAT
CACGGCGAACCTCCTGTCCAAATTAGAGCCTCACCGTATAAAATCCCAAAACCAAATGAT
TCTGATACGAATTTAAGTAGTATTATCCAACAGAATAATTTCTGTAATACTAACTTAAAT
ACCATCGGAAAACAATTGACCAGGATAGAAAACCAATTCCAAAAGTCAACCATAGCTACT
TCCTCCGTTTCTCATGTTTAATCAAAATCGGATTCTAACAAAAAGCTTAAAGAACCTATT
TTCAAACATTTTCAGGTTTCAAAAACTAGTCAAAAACTTGTCCAAGAGTCAAAATCAGAT
TTTGCTAAAGCCATTAGAGAACAACTAGATAGGATAGAAGCTACTTCTTCCTCATCTAGC
AAAGTTCAAATAGCCCCTGATACTCCTCAATCTAGCAAGATTGGAGTATTAGAACATGAC
CAAATGTCTATAGCCTCTTCAGATATAGAAGCCTTCAAAGAAGAACATATTCCTAAAGCA
AACAAAATCAATTAGGAACTAGCCCTTCCCACTGTCAAGCCTCCACCTGATTTGACCATA
GACAACAGGCCTAGTGCATTAAATCAGACTCGATAGAATGCATCCTCTGTCTATGAGTGG
AATATAGATGGAATGTCTGAATACAACATCCTAGGAGTGTTGCAACAAATGACCATGGCA
GCCAATGCCTATAAAACCCAATCAAGAACTTCTGACAAAACCATTGCAGAAATCCTTATT
CCAGGTTTTACTGGTCAACTTAAAGGTTGGTGGGATCATCTTCTCACCAAACAGCAACAA
TTAGATATCCTAAATTCTATCCAAGTTGATGAGAATGGTGCCCCCATTCTTGATGAATTT
AATAGTCCAATTCAGGATGCTGTTGCTACCCTGATTTTGACTATATCCCTTCATTTCATA
GGTGACCCTTCTCACCTTAGAGATAAGAACGCTGAGTTACTACATAATTTGAGATGTAGA
AAACTTAGTGAATTCCAAAGCTATAAAACCACTTTCTTCACCAGACTCTTCCTTAGGGAT
GATGCAAATCATATAACTTGGAAGGAGAAATTCCTCGCAGGTTTACCAACCCTTCTAGGA
GAAAATGTTAGGAATTCCATTAAAGCCATTTATGATAACCGCATTCCTTATGATGAGCTC
ACCTACGGTGAACTTGTCAGTTTTGTTAACAAGGAAGGATTAAAGATCTGTCAAGATTTG
AAATTACAGAAACGGCTTAAATGGGAGCTTAGGAAATCTAAGCAAGAATTAGGCAGTTTC
TGTAAACAATTCAATTATGACCCCTTTAAAACTTCTACATTCAAAGATTGTAATGGTAAG
TGTTCTTCAAAACCTTACAAGAAACATTACAAATCCAAAAGCCATAGAAAACCCTTCCAA
GATTTTAGAGAACTTTCTTATAAGAAACCTTCGAGGCCTTATAAGAAACCAAATTTCTCT
AAAAAGAAAGACTTTAAAACCAAACCAAAAACCCCTTTTAACTACAAAGAAGCCATATGT
CATAAATGTGGTATGAAAGGTCATACTGCAAAATACTGCAGGATGAACAGAAAGCTCCAT
GAGCTTGGCCTTGATGAAGAAACCCTTTCTAAAGTTACCTCTCTCCTAATAGAGTCTTCT
GACTCTGAGTCTTCCATGTCGGGAGATAGTGACCCTCTTCAGGTCGATGAGTTAATTGAC
TCAGATACCTCTGCATCTAGCAGTAGTGATTCTGAAACAGATTCTTATTTAAAGAAAATC
AATGTTTTGACTAAAGACCAAGAAATTTTTCTTAAACTTGTTAAACATATTTCTAATCCA
AATCTTCAAAAAGAATACCTTGATAAACTTTTAAAAACTCTAGATTCTAATAAAGCAGAA
ACTTCTAAAGTTCCAATTGTTAAAAAGAATTCTTATGATCTCATTGAAATTTTGGATAAA
AAGAAAACAAAGAAAACAATCCCCAATATCCAAGATCTTCAAAAAGAAATCAAAGAAATC
AAACTTGAGATTAAAGAATTAAAAGAAAAACAAAAGAATGATTCTGAAACTATTCAACTT
CTTATACAAAAACAATTAGAAGATAATTCAGACAAAGAAGTTGAATCCGATGGTGATAAT
GAACAAAATGTTGAAAACATTGAATCTGTACCCAATGATTTTCTGTTTGTTTTAAAACAA
ATCACCACCAGAAAATACTTAATTAAAATCACTTTAGTTTTTTCCAAAGATTTTGCAATT
GACGCCATTGCCCTTTTTGACACTGGTGCCGATTTAAATTGCATAAGAGAAGACATTGTT
CCCAAAAGATTTCATGAAAAAACAAAAGAAAGACTTTCTGCCGCCAATAATTCAAAACTT
AAAGTCAATTCTAAAGTTGAAGCCTCAATTCATAACAATGGTTTTGAATTTAGAACTTCT
TTTCTTCTTACAAATGACATACACCATACTGTCATTTTAGGAACCCCTTTTATAAATCTT
ATTACCCCATATACTGTCAACTATGATAGTATATCTTTTAAAGCAAAAAATAAAAAACTT
GTTTTCCCTTTTATTGAGAAACCAAAAACAAGAAATTTAAATATTGTTAAAGCTTGTTCT
GTTTATCAGAATCAAATCAATGCCATTCTTAAGTCTAAACAAAATGACTTGTTTTGTTTA
AAAAAGGATTTAAGTTTACAAAGAATTGAAAGCCAATTACAAAATGATTTTATACAAAGA
AAAATCTCTGATTTCAAAAACCTCATTGAAAAGGAAATATGTGCAGATCTACCTTCTGCT
TTTTGGAATAGAAAACAACATTTGGTAGATTTGCCTTATGAAAATTCTTTTGATGAAAAA
CAAATACCCACTAAAGCCCGTCCAATCCAAATGAACATGGAATTGGAACAACATTGTAAA
AATGAGATAAAAGATTTGGAGACTAAAGGACTCATTGTAAAATCTAGATCTCCATGGTCT
TGTGCCGCTTTTTATGTAAATAAAAATTCTGAGATTGAAAGAGGAACACCAAGACTGGTA
ATAAATTACAAACCCTTAAATAAAGCATTAAAATGGATTAGGTATCCTATACCTAATAAA
AAAGATTTGCTCCAGAAACTGTATTCTGCTTTTATTTTTTCAAAATTTGACATGAAATCT
GGTTTTTGGCAAATTCAAATTCACCCTAAAGACCGTTACAAAACTGCTTTTACTGTTCCT
TTCGGACAGTATGAATGGACTGTTATGCCTTTTGGTTTGAAAAATGCACCCTCAGAATTT
CAAAGAATCATGAATGACATTTACAACCCTTATTCTGAGTTTTGCATTGTTTATATTGAT
GACGTGTTGATTTTTTCTCAAACTATTGATCAACATTTCAAGCATTTAAAGACTTTTTAC
TTTGCCACTAGAAAGGCTGGATTAGCCATTTCTAGTTCTAAAGTCTCTTTGTTCCAAACA
AAAATCAGGTTCCTTGGTCATTATATTTCCAAAGGAACTATTACTCCTATTGAGCGATCT
CTTGTGTTTGCAGATAAATTCCCAGATAAAATTCTTGATAAAACTCAATTACAAAGATTT
CTAGGAAGTTTAAATTATGTTCTTGATTTCTGCCCTAATATCAATAGGATGTCCAAACCT
TTGCATGATAGGTTAAAAAAGAATCATGTTGCATGGACTGATGAACATACCAAAGTTGTT
AAACTAATAAAGAATTCTGTTAAAAATATTCCATGTTTATTTCTTGCAAATCCTGCATTA
CCTAAAATCGTTGAAACTGATGCATCTGATTTAGGTTATGGAGGTATATTAAAACAAAAA
GAAAATGATAAAGAACAGATAGTACAATATGTTTCTGCACATTGGAATGAATGCCAGAAA
AATTATTCTACTATCAAAAAAGAAATTCTTTCCATTGTTTTATGCATTTCTAAATTCCAA
AGTGATTTACTAAATCAAAAATTTTTACTTAGAATTGATTGCAAAGCTGCAAAACATGTT
TTAGAAAAAGATGTTCAAAACATTGCATCAAAACAGATTTTTGCACGATGGCAAGCCATT
TTAAGTGTTTTTGATTTTGATATTGAATTTATTAAAGGTGATACAAATTCTGTTCCTGAT
TTTCTAACCAGAGAATTTCTTCAAAACAGATAATGCCGCCAAAAAAAAAAGACAAAGGTA
AAGCTGTTCTCAAAGACACTGAGTCTCAAAAAACCTCTAAAGAACCCCAATCAACCCCTT
CTAAAGAAAAATTACTTTCTTCTGCCATGCCCATCAAATCCTGGATTGAAATGGTTGAAG
AACAAGAAGCCCAGTATAAAAACATTACCTCTGATGACCAAGTAAAACAATGGATGAGTT
CCATTACAAAATCCCCTGAGCTTATGCTCGCTTTACAAAGCTTTTCTCAAAGCCAAATTT
CTCCTAAAGAAGAAATTGAAAAAGAAAAACCTATTTCCAAAGAGATTTCAAAACCCTCTT
CTCAAAATATAGTTGTTTCTGGTGAAAGTTCATCTTCTCAAATTGTTCTTTCCCAACCAA
CACTTTCAAAGAAATCTTCCGATTGGTTTGATAAAACCCATTTCCAAAACATTTTAACTA
TGGAAGATGGATTTTACCACACTGATCCTTTTCAAGCAATTTCAAAGTTTTTCCCCAAAG
GCTGGTTTTTTAAACCATGGGATTTGACAAAACCCCAGTCTTATTATCAAAGCATTTTAG
AAGCCACTGAGTCAGTAAAATTCAAACATTTCTTTCTCAGTGAAACCCATTCTGAGCCAG
CCTATTCTACGGCTACTATCCTAAAAGTCTTGAGCCCAAACCAATGGGGTGATCAACTTC
ACAAACATAAAACCTTCCCTCCAAACTTTCAAATGCGTTTACCACATTGTTTGACTTATT
CCTACTGGGATTATCAACAAGCCTGGTATAACACATTTTTTATCCAAAACCCAAAAAAAT
CCCACTCTTGGTTATTTTTCTTCAATTCAAAAATAACCGTCCAAAGCCTCCCAAACTGGT
TTCAACAATGGTGGAACTATTTTGGCCCAATACCTCAAATTCTAACTCCTAATGCCACCC
ATTGTTTAAACCTCTTTAAAGCCCATTATATTCCTTCTGAATCCGAGAAAAGGTTTCCCC
CATTTCTATGTTTCTGTACAAATTTCTTCCTTCCATGGGTATGGATGTGGAACCTCAGAT
TTCATACCCAAGAAGCCCAACTTATCCTACAAAGAACCTTCAAAGTAAAATGGTGGTCAA
AGTTTGATGAACAGACTAAATTGACTGACACCCTAATCCGAAATTGGCTCTGTTCCAAAG
GCTTCCTACAACCAACCATAACAGGCTCCAAAGCCCAACAAACCTTCCTTACCCAAAAAT
CCAAAGCCCAATCTCTTTTGGCAAGCGCCAAAACTGAAGAAGAATATTTCAAAGTTATGG
AACAACTCCTCACCTCAAGATCAAAGTCATCAGTGGCAAACTCCTCTGAAGATGAAGACC
AAGATGAAGAAGAACCGTTCATTTCTCTTGGGGATGAAAATGAAGACGACTGCTTCGGAA
TTTTCTCTCCAATAAAACATTGTAAATAATTGCCATGTAAAAAAAAAAAGTATTCTAATA
TTTTCATTTTTTATATTCTGTACCCTTGGGTGGTCCCCTGGATACAAGTGAGAGCGCACA
TGTCTCTTCACCCGAATTAAAATTAGAAAAGCTTGTGCATTCCAAAGACTACTGTATACT
CAAGCTGCACTACAGTCTACAGTGAGCCTGTGCATTCCAAAGACTACTGTATACTCAAGC
TCCGCTACAGTCTATAGTGAAGATTTCCAAAGATTACTGTATGCTACAGCCCCGCTACAG |