Tggtatcaaagccaaccctgttttagaaatctaaaagttaatactagttcttctatctta agaaacttaataaattaatccattaaagaaagttggtccgagaattgaggttagagacgc tcaggacacccagtcagttgaccgtttaggccaggagagccgctgaggtctagaagacgt
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CTTCATGAACTTGACCTCGATGAAGAGATCCTTTCCAAATTAGCCCCCCTTCTTGTCGAA TCTTCTGATTCCGAATCTTCCATGTCGGGAGACAGTGATCCATATCAAGTTGATGAACTT TTTGACTCAGATGACTCTGTATCTAGCAGTAGTGAATCTGAATCTGATTCATATTTAAAG AAAATCAATGTTTTGACTAAAGACCAAGAAACTTTTCTTGAACTTGTAAAGCATATTTCT GATCCAAATCTTCAAAAAGAATATCTTGATAAACTTTTGAAAACTTTGGATTTTAATAAA GCCGAGACTTCTAAAGTCCCAATTGTTAAAAAGAATTCTTATGATCTTACTCAAATTTTG GATAAAAAGAAAACAAAGAAGACGGTTCCTAATATCCAAGATCTTCAGAAAGAGATAAAA GAAATCAAATGTGAAATCAGAGATTTAAAAGAAAAACAAAAAAGTGATTCTGATACTATC CAACTTCTTTTACAAAAACAATTGCAGGATAATTCAGACAATGAATCTAATCCTGATGAT GGTGATGATATTAAAGTAGAAAACATTGAGTCAGTACCCAATGATTTTCTATTTGTTTTA AAGCAAATCACCACAAGAAAGTATTTGATTAAAGTCACTTTAATCTTTTCTGATGATTTT GCAATGGACGCCATTGCCCTTTTTGATACTGGCGCTGATTTAAATTGCATTAGAGAAGAC ATCGTCCCCAAAAGATTTCATGAAAAAACAAAAGAAAGACTTTCTGCCGCTAATAATTCA AAACTGAATGTCAGTTCCAAGGTTGAAGCCTCAATCCATAATAATGGTTTTGATTTTAAA ACTTCTTTTGTCCTCACAAATGATATTCATCATGCCATCATTTTGGGAACTCCTTTTATA AATCTTATAACTCCATATACTGTCAATTATGATAGTATATCCTTCAAAGCAAAAAACAAG AAACTTGTTTTCCCTTTTATTGAAAAACCTAAAACAAGGAATTTGAATATTGTTAAAGCC TGTTCTGTTTATCAAAACAAAATTAATAACATACTTAAATCAAAACAATATGATTTAATG TGTTTACAAAAGGATTTAAACTTACAAAGAATTGAAAGCCAATTACAAAATGATTTCATA AAAAGAAAAATCTCTGATTTCAAAACTCTCATTGAAAAAGAAATTTGTGCTGATCTACCA TCTGCTTTTTGGAACAGAAAACAACACATGGTAGATCTACCTTATGAAACTTCTTTTAAT GAAAGACAAATCCCCACTAAAGCACGTCCAATCCAGATGAACATGGAATTGGAACAACAT TGCAAAAATGAAATCAAAGATTTAGAGTCAAAAGGACTCATTGTTAAATCAAGGTCCCCA TGGTCTTGTGCCGCTTTTTATGTTAATAAAAATTCTGAAATTGAAAGAGGCACTCCTAGA TTAGTTATAAACTACAAACCTCTTAATAACGCTCTAAAATGGATTAGGTATCCAATACCT AATAAAAAGGATTTACTCCAAAAACTATGTTCTGCTCTTATTTTTTCAAAATTCGACATG AAATCTGGTTTTTGGCAAATTCAAATTCATCCTAATGACCGTTACAAAACTGCTTTTACT GTTCCATTTGGACAGTATGAGTGGACTGTTATGCCCTTTGGTTTAAAAAATGCACCCTCA GAATTTCAAAGAATCATGAACGATATTTATAATCCTTATTCTGATTTTTGCATCGTTTAC ATTGACGATGTATTGATATTTTCAAGAACTATCGATCAACATTTCAAACATTTAAAGACT TTTTATTTTGCCACAAAAAAGGCTGGATTAGCAATTTCCAGTTCAAAAATTTCTTTATTC CAAACAAAAGTCAGATTCCTTGGTCATCATATTTCCAAAGGAACTATCACTCCAATAGAG AGATCACTTTTGTTTGCTGATAAATTCCCAGACAAAATTCTGGACAAAACCCAATTACAA AGATTTCTTGGAAGTTTAAATTATGTTCTCGATTTCTGCCCTAACATTAATAGGATGTCT AAACCTTTGCATGATAGGTTGAAAAAGAATCATGTTGCATGGACAGAAGAACATACCAAA GTTGTAAAACTAATAAAGAAATCTGTGAAAAACATCCCATGCTTATATCTTGCAAATCCT GCATTACCTAAAATTGTTGAAACTGATGCATCTGATATAGGTTATGGAGGCATATTAAAA CAAAAAGAAAATGACAAAGAACAGATAGTACAATATGTTTCTGCACATTGGAATGATTGC CAGAAAAATTATTCTACTATCAAAAAAGAAATCCTTTCCATTGTTTTATGCATAACAAAA TTTCAAAGTGATTTACTAAATCAAAAATTTCTACTTAGAATTGATTGCAAAGCTGCAAAA CATGTTTTAGAAAAAGATGTTCAAAACATTGCATCAAAACAGATTTTTGCACGATGGCAA GCCATTTTAAGTGTTTTTTATTTTGATATTGAATATATTAAAGGTGACAAAAATTCTATT CCTGATTTTCTAACCAGAGAATTTCTTCAAAACAGATAATGCCGCCAAAGAAGAAAGACA AAGGTAAAGCTGTTCTCAAAGATTCTGAATCTAAAGCAACCTCTAAAGAACCCCAAGCTA CCCCTTCTAAAGACAAATTACTTTCCTCAGCCATGCCTATTAAATCTTGGATAGAAATGG TTGAAGAACATGGAGCCCAATACAAAACCACTTCTTCTGATGACCAAGTAAAACAATGGA TGAGTTCCATTACAAAATCCCCAGAGCTCATGCTCGCCCTACAAAACCTTTCCCAAAGCC AAACTTCCCCAAAAGAGAAAAGAAAACCCTATCTCCAAAGAAATCGAAAAACCCTCTTCT CAAAATATGATTGTCTCTGCTGAAAGCTCATCTTCCCAAATTGTGCTTTCCCAACCAACA CCTTCAAAGAAAACCTCCGATTGGTTTGATAAAACCCATTTTCAAAACATTCTTTCTATA GAAGATGGATTTTACCATACTGATCCTTTCCAAACAATTTCAAAGTTTTTCCCTAAGGGC TGGTTTTTCAAACCATGGGATTTAACAAAACCCCAGTCCTACTATCAAAGCATTTTAGAA ATAACTGAATCAGTTAAATTCAAACATTTCTTTCTTGATAAAACCCATTCTGAGCCGGCT TATTCCACGGCCACAATCTTAAAAGTTTTGAGCCCAAACCAGTGGGGTGATCTACTCCAC AATTTCAAAACCTTTCCTTTAAATTTTGAGACCCGTTTACCACATTGTCGGACTTTTTCC TACTGGGATTACCAACAAGCCTGGTATAACACCTTTTTTATCCAAAACCCTAAAAAATCT CATTCTTGGTTATTTTTCTTTAATTCAAAAATAACCGTCCAAAGCCTACCTAATTGGTTC CATCATTGGTGGAACTTTTTCGGACCAATACCTCAAATCCTAACTCCAAATGCCACAAAT TGTTTAAACCTCTTTAAAACCCATTATAATCCTTCTGACTCAGAGAAAAGATTTCCCCCC TTTCTCTGTTTTTGTACAAACTTCTTCCTACCATGGGTCTGGATGTGGAACCTCCGATTT CATACCCATGAGTCCCAAGTCATCCTTCAAAGAACCTTCAAAGTCAAATGGTGGTCAAAA TTTGATGAACAGTCCAAATTGACTGTTAACATGATCAAAGATTGGCTCTCCTCTAAAAAC CTCCTACAACCAACCCTAGAAGCCTCAAAAGCCCAACAAACCTTCCTAACCCAAAAATCC AAAGCCCAATCTCTATTGGCAAGCGCCAAAACTGAAGATGAATATTTTAAAGCCATGGAA CAGCTCCTCGCCTCAAGATCAAAATCCTCAGTTGCAGACTCCTCTGAAGATGAAGATGAT GATGAAGACGAAGAGCCATTCATTTCCCTTGGAGACGAAAACGAAGATGATTGTTTCGGC ATTTTCTTCTCCAGTAAAGCATTGTAAATAATTATTTGATTATTTACTTAAAAAAAAAAT TTATGTATTTTCGGGTGGTCCCCTGGACACAAGTGAGAGCGCACATGTCTCTTCACCCGT ATTGTATGTCAGTCTGTATTTCAGTATTTGTACAAAGCATCTACTATTCAAAGATACGAT CCAATTGTTACTGTGCACTTAAAATCCCGCTACAGTGAACAGTGCAGATTTCCAGATGTT ACTGTGCACTTAAAATCCCGCTACAGTGAACAGTTTAAAGATCTTTGTATAAAAACCGAG AGGAAGACTCAGACTCCTCAGGTTTTTCATTTCTCATTTTTAGAGCTTCTCTCTCTACTT CTCTTCCTTCTCTCTAAAACTCTCTCTCTCTCTCTCT >CclemV_scCc2 [endogenous-virus-name=Citrus clementina virus] [strain=sequence cluster Cc2] [host=Citrus clementina] [moltype=genomic DNA] [note=complete genome, mutations in ORF1] 7718 bp TGGTATCAGAGCCAAGGGGAGGATAGTGTAATACAGTTTAGAGTTTTTGTGTTTAAAGAC TTGTGTTTTATTTAAATTTTGTTTGTGTGGTGAATTTTTACTGGTAGTAAGTCCCGTTTT AGGATAAGGATTTCCGCTTAGGGCTGTAAAACCATACCTGTAGCCATTCAACCAAGACCT TAGATTGACCATAAGTTCTTTCTTCATGGATCCTCTGCTCTGTAGAGCATCGTCCTTTTC TAGCTCTTCTTCCGGGAAGACTAGTGATTCAAAGCATGTTGTGAGTTCAGAAGAATTCAT TATTGAGAACTTTGATAAAGCAATTGATTGTTGGGAACTTCCAAAAATTTCCAAAGAAAA GATTTACAAAACAAAAAAGCTTGATTTTTTAAAAAATGATTATGTTATAAAGACTGAAGA ACGTGACATAACTCTTTCAGAACCATTTGAAACAATTCATTTGTTTTCAGAAAAGTCTTT AAAGAAATTAAAAGAAAAGAATTTTAATTATATTCACATTGGTCTTATTCAAGTAGGAAT AAAACCTTTAACAAAAGAAGGCCTGGATACTTCTATCCTCGCTGTCCTAAGAGATGGGCG ATTCATCTCTTTTGATGATTCATTGCTAAGTAGCATCGAATCCAGTCTCTGTAAAGGTCC GATTTCTTTTGATTGCTATCCAAACATAACAATTTCTCTTAAAGACAAAAATATTTTGAA AAGCATGATTTTACAAATCAAAACCCATAATTATAATATGATTAAAGGATCTGTCCCAGT TGCTTTAATTTTTAAAATTTCATATAAAGCTATGATTTCTGCGTTCAGTACGCAACATAA ATTCCAGTAAAAAAGAGATGAGACTCTTCTCTTGCAGACTGATTTGTCTAGAGCCAACAC TGTTATTCCAAAACCAATCCAATGGAAAGATGTCAATCTTCCAGAAGAATGGATTCTTGA AGGAGCTGCTCCACCAGCAATTCCAAAACAACTTGAGCCTAATACAGAGTTGCAAAATGT GACTCAGTATTCTGATGGTAAAGTCAAACTATCTTTCAGAAGATCTAACTCAACCAGATT TTCTGATAAAGAGTCGTGCTCAAGCATTCCTTCATTAGAAAGGAAATTTACAAAAATCCC TTCAGTTATAAATCTTCCTTTCCAACCTGTAAAGAGTCAACCTAGGTTTTCAACCTCAGA TATTCCTAGTTCCTCTATTCGTTCTGTTGACTATACCACAAATATTCCTCATCCAATTTA TACTAGCAGTCAACATGAACAAAAACAGGAAGAGAAGGAACCTTCTCCTCCAACTTCCCC TACTTTTTCTGCTATCACAGAAAATGTTATAAATGTTATTGAAAAGAATTTTGAACTTGA TAAAAATCTTCTCCATAATGATTTTTATTCAGATAATAATAAAGAAAAAAGACTTTGGTT TTTCAAACATTTTTTAAACCAAAGAAAAGAAATCCAACAAATCTATTATGAATTTGTGAA TTTTCATCAAGTTCATATATTGTTTTTTGATTGGTTCGAAATATATTCTTCTGAAAACAA CATTTCTTATCCTTTTAAAGAGTCAAACCCTATTACTATTAGGAAGAAAATTCCTGAGTG GAAACTTTCTGATAGTGATAGAACCATAGAATCTGAGCATCCACCTCTTCGGAGTATAAC CGTTGATCACGGTGAACCTCCTGTCCAAATTAGAGCCTCACCTTACAAAATCCCAAAACC TAATGATTCTGATGCCAATTTAAGTAGTATTATCCAACAGAATAATTTCTGTAATACTAA CTTAAATACAATCGGAAAACAGTTGACTAGGATAGAAAACCAATTCCAAAAGTCAACCAT TACTGTTTCTTCGATTTCTCCTATTCCATCAAAATCGGATTCTGACAAAAAGCTTAAAGA ACCTATTTTCAAACCTTTTCAGGTTTCGAAAACTAGCCAAAAGCTTGTTCAAGAGTCAAA ATCAGATTTTGCTAAAGCCATTAGAGAACAACTAGATAGGATAGAAGCTGCTTCTTCCTC ATCTAGCAAAGTTCAGATAGCCCCTGATACTCCTCAATCTAGCAAGATTGGAGTATTAGA ACAAGACCAAATGTCTATAGCCTCTTCTGATATAGAAGCCTTCAAAGAAGAACCTTCTAC TCCTAAAGCCAACAAAATTCATTGGGAATTAGCCCTTCCCACTGTCAAGACTCCACCGGA TCTAGCAATAGATAATAGACCAAGTGCATTAAATCAATCCCGATACAATGCATCTTCAGT CTATGAGTGGAATATTGATGGTATGTCCGAATACAATATCCTAGGATTGTTGCAACAAAT GACCATGGCAGCCAATGCCTATAAAACCCAATCAGGAACTTCTGACAATGCCATTGCAGA AATCCTTATTGCCGGTTTTACTGGTCAACTTAAAGGTTGGTGGGATCATCTTCTCACTAA TCAGCAACAATTAGACATTCTAAATTCTATCCAAATAGATGAAAATGGAGCCCCCATTCT TGATGAGTTCAATAACCCTATTCAGGATGCTGTAGCCACCCTAATTCTAACCATTTCCCT CCATTTCATAGGTGACCCTTCTCACCTTAGAGATAAAAACGCTGAGTTACTACATAATTT AAGATGTAGGAAACTTAGTGAATTCCAAAGCTACAAAACCACATTCTTTACCAGACTATT TCTAAGAGATGATGCAAATCATATAACTTGGAAAGAAAAATTCCTTGCAGGATTACCTAC CCTTTTAGGTGAAAAGGTAAGAAATTCCATCAAAGCCCTTTATGATAACCGTATTCCTTA TGATGAGCTCACCTATGGTGAACTAGTCAGTTTTGTCAATAAAGAAGGTTTAAAGATCTG TCAAGATTTGAAATTACAGAAACGACTTAAATGGGAGCTTAAGAAGTCTAAGCAAGAATT AGGCGGTTTCTGTAAACAATTCAATTATGACCCCTTTAAAACTTCTATCTCCAAAGATTG TAATGGTGAGTGTTCTTCTAGACCTCACAGGAAACATTACAAATCCAAAAGCTATAGGAA ACCATTCCATAATTTTAGAGAATCTTCTTATAAGAAACCTTCGAGGCCTTATAAGAAACC CAAATTCTCTAAAAAAAAGAGTTTAAAGCCAAACCAAAGACTCCTTTCAATTACAAAGAA GCCATATGTCACAAGTGTGGCATAAAAGGCCATACTGCAAAATATTGCAGAATGAACAAA AAACTTCATGAGCTTGACCTTGATGACGAAATCCTTTCCAAATTAGCCCCTCTTCTTATA GAGTCTTCTGATTCCGAGTCTTCCATGTCAGGAGACAGTGATCCTCATCAAGTCGATGAG CTTTTTGACTCAGATAACTCTGCATCTAGCAGTAGTGAATCTGAATCTGATTCATTTTTA AAGAAAATCAATGTTTTGACTAAAGACCAAGAAACTTTTCTTGAACTTGTAAAGCATATT TCTGATCCAAATCTTCAAAAGGAATATCTTGATAAACTTTTGAAAACTCTGGATTTTAAT AAAGCCGAAACTTCTAAAGTTCCAATTGTTAAAAAGAATTCTTATGATCTTACTCAGATT TTGGATAAAAAGAAAACAAAGAAAATTGTCCCTAATATCCAAGATCTTCAAAAAGAAATC AAAGATATTAAACTTGAGATTAAGGATTTGAAAGAAAAACAAAAGCATGATTCCGAGACT ATTCAACTTCTTTTACAGAAGCAATTGCAAGATAATTCAGATAATGAATCAAATCCTGAT GATGGTGATGACAATGACCAAAATTTAGAAAATATTGAGTCTGTACCCAATGATTTTCTA TTTGTTTTAAAACAGATCACCATGAGAAAGTATTTGATTAAAATCACTTTGATTTTTTCT AATGATTTTGCAATTGACGCCATTGCCCTTTTTGACACTGGTGCCGATTTAAATTGCATA AGAGAGGACATTGTCCCCAAAAGATTTCATGAGAAAACAAAAGAAAGACTTTCTGCCGCC AACAATTCAAAGCTTAATGTAAATTCTAAAGTCGAAGCTTCAATTCATAACGATGGTTTT GAATTTAAAACTTCTTTTGTTCTTACAAATGACATACACCATGCTGTCATTTTAGGAACC CCTTTTATAAATCTTATCACACCTTATACTGTCAATTATGATAGTATATCTTTTAAAGCA AAAGACAAAAAGTTTGTTTTCCCATTTATTGAAAAGCCAAAAACAAGAAATTTAAATATT GTTAAAGCATGTTCTGTTTATCAGAATCAAATCAACAATCTTCTCCGATCAAGACAAAGT GATTTAATGTTTTTACAAAAGGATTTAAGTTTAAAAAGAATTGAAAGCCAATTACAAAAT GAGTTCATCCAAAAGAAAATCTCTGATTTTAAAGATCTAATTGAGAAAGAAATTTGTGCC GATCTACCTTCAGCCTTTTGGAATAGGAAACAACATTTGGTAGATTTGCCTTACGAGAAT TCTTTTGATGAAAGACAGATACCTACTAAAGCTCGTCCAATCCAAATGAATATGGATTTG GAACAACATTGTAGAACTGAAATAAAAGACTTGGAGTCTAAAGGACTCATTGTAAAATCT AGATCCCCATGGTCTTGTGCCGCTTTTTATGTAAACAAAAATTCTGAAATTGAAAGAGGA GTACCAAGATTAGTCATAAATTATAAACCCCTTAATAAAGCATTAAAATGGATTAGGTAC CCAATACCTAACAAAAAGGATTTGCTTCAAAAACTGCATTCTGCTTTCATATTTTCCAAA TTTGACATGAAATCGGGTTTTTGGCAAATTCAAATTCATCCAAAAGACCGTTATAAAACC GCTTTTACTGTTCCTTTTGGACAGTATGAGTGGACTGTTATGCCATTTGGGTTGAAAAAT GCGCCTTCAGAATTTCAAAGAATTATGAATGACATTTATAACCCTTATTCTGATTTTTGC ATTGTTTATATCGATGATGTTTTGATTTTTTCTCAAACCATCGACCAACATTTTAAACAT CTAAAGACCTTTTACCTTGCTACCAGAAAAGCTGGTTTAGCAATCTCTAAGTCTAAAGTC TCTTTGTTTCATACAAAGATCAGGTTCCTAGGTCACCATATTTCCAAAGGAACCATTACC CCTATTGAGCGTTCTCTTGCCTTTGCAGACAAGTTTCCTGATAAAATCCTTGATAAAACT CAATTACAAAGATTTCTAGGAAGTCTAAATTATGTTCTTGATTTCTGTCCAAATATCAAT AGGATGTCCAAACCTTTGCATGATAGGTTAAAAAAGAATCCTGTTGCCTGGACCGATGAG CATACTAAAGTAGTTAGACTTATAAAGAATTCTGTAAAAAGCATCCCATGTTTATTTCTT GCAAATCCTGCATTACCTAAAATTGTTGAAACTGATGCATCTGATTTAGGTTATGGAGGA ATATTAAAGCAAAAAGATAATGATAAGGAACAGATAGTTCAATATGTTTCTGCACATTGG AATGAATGCCAAAAGAATTATTCAACCATCAAAAAAGAAATTCTTTCCATTGTTTTATGC ATTTCAAAATTCCAACATGATTTATTAAATCAAAAATTTCTACTTAGAATTGATTGCAAA GCTGCAAAACATGTTTTAGAAAAAGATGTTCAAAACATTGCATCAAAACAAATTTTTGCA CGATGGCAAGCCATTTTAAGTGTTTTTGATTTTGATATTGAGTTCATTAAAGGAGATACA AATTTTATTCCTGATTTTCTAACCAGAGAATTTTTGCAAAGCAGATAATGCCGCCGAAGA AAAAAGACAAAGGTAAAGCTGTTCTCAAAGATACCGAACCTACAAAAACCTCCAAAGAAC CTCAATCTACTCCCTCTAAAGAAAAATTACTTTCTTCAGCCATACCCATTAAATCCTGGA TTGAATTGGTTGAAGAAAATCAAGGAACCCAATACAAATCCATCTCCTCTGAACAACAAG TCAAAGAGTGGATGGAATCTATTACAAAGTCCCCTGAGCTTATGCTTGCCTTACAAGGCA TCTCAAAATCTAAAGCCCTTTCTCAGATCCCTGAGGAAGAAAAACCAATTTCTAAAGAAA TTACAAAGTCTTCTTCCCAAAGCCAAACTGTTGTTCTTTCTGGTGAAAGTTCATCTTCTC AGATTGTTCTTTCCCAGCCAACACCTTCAAAGAAAACTTCCGATTGGTATGATAAAACCC ATTTTCAAAATGTTTTAACTATGGAAGATGGATTTTACCACACTGATCCTTTCCAAGCAA TCTCAAAGTTTTTTCCTAAAGGCTGGTTTTTCAAACCATGGGATTTAACAAAACCCCAGC CTTATTATCAAAGCATTTTAGAAGCCACTGAGTCTGTAAAATTTAAACATTTCTTTCTCA GTGAAACCCATTCAGAGCCGGCCTACTCCACGGCCACTATTTTAAAAGTTTTAAGCCCAA ACCAGTGGGGTGACCAACTCCACAAATTCAAAACTTTCCCTCCAAGTTTTCAAATGCGTT TACCACACTGCCTGGCCTATTCCTATTGGGACTACCAGCAAGCTTGGTTCAACACATTTT TCTTACAAAACCCAAAAAAGTCCCATTCATGGTTATTTTTCTTCAATTCAAAAATAACCG TCCAAAGTCTTCCAAATTGGTTCCAACAGTGGTGGAATTTTTTTGGTCCAACACCACAAA TCCTAACTCCAAATGCCACTCATTGTTTAAACCTTTTCAAAACCCATTATTCCCCTTCAG ATTCAGAGAAACGGTTTTCTCCCTTCCTCTGTTTTTGTACCAATTTCTTCCTCCCATGGG TATGGATGTGGAATTTCAGATTTCATACTCATGAAAAACAACTCATCATACAAAGAACTT TCAAAGTCAAGTGGTGGTCAAAATTCGATGAACAAACCAAATTGACTGAATCCCTCATCA AAAATTGGCTTTGTTCAAAAGGCTTTCTACCACAAACCATTAAAGACTCCAAAGCCCAAC AAACCTTCCTAACCCAAAAATCCAAAGCCCAATCTCTCCTGGCTAGTGCCAAAACTGAAG ATGAATACTTCAAAGTCATGGAACAACTCCTCACCTCCAGATCAAAGTCTTCAGTAGCTG ACACCTCTGAAGAAGAAGAAGAAGATGAAGAGCCATTTGATGAAGAACCATTCATTTCTC TTGGAGACGATAATGAAGATGACTGTTTCGGAATTTTCTCTCCAGTAAAGCATTGTAAAT AATTATTTGATTATTTACTTAAAAAAAAAGAATTTTTATTCGGGTGGTCCCCTGGACACA AGTGAGAGCGCACATGTCTCTTCACCCGGGGTGTATTTTGTATTTTGTATTTTGTATTTT GTATTTTGTACAAAGCAACAGCACCGCTACAGTGCCAATTTCCAAAGTTTACTGTGCACT TAAAGCTCCGCTACAGTCTACAGTGCCAATTTCCAAAGATTACTGTGCACTTAAAGCTCC GCTACAGTGAACAGTTTAAAATGTTTCTATAAAAACCGAGAGGAAGACTTAGACTCCTCA GGTTTTTCATTTCTCTTCTTCTCTCCCTTCTCTCTAAAAAACTTCTTCTCTCTTCTTCTT CTCTTACTACTCTCTCTCTCTCTCTCTTCTTTCTCTCCTGAGACAAAAGAAGTTTTCTGT ATTCAAGGAATTTTCCTATCATCGATCCTATTTCCTTC >CclemV_scCc3 [endogenous-virus-name=Citrus clementina virus] [strain=sequence cluster Cc3] [host=Citrus clementina] [moltype=genomic DNA] [note=incomplete genome, mutations in ORF1] 7592 bp TGGTATCAGAGCCAACGGGAGAAAAGTGTTTTATTGTTTAGAGTTTTCGTGTTTTAAAAT CTTGTGTTTTATTTTGAAGTTTTGTTTTTGTGGTGAATTTTTACTGGTTGTAAGTCCCGT TTTAGGATAAGGATTCCGCTGAGGGCTGTAAATCCATACCTGTAGCCATTCTAACCAAAC CAAAAATAGACCATAAGGTCTTGACCATGGACCCTCTACTCGGTAGAACATCGTCCTTTT CTAGCTCTTCTTCCGGGAAGACTAGTGATTCAAAGCATGTTGTGAGTTCAGAAGAATTCA TTATTGAGAACTTTGATAAAGCAATTGATTGTTGGGAACTTCCAAAAATTTCCAAAGAAA AGATTTACAAAACAAAAATGCTTGATATTTTAAAACATGATTATATTATAAAGACTGAAG AACGTGACATAACTCTTTCAGAGCCTTTTGAAACAATTTATTTGTTTTCAGAAAAATCTT TAAAGAAATTAAAAGAAAAGAATTTCAAATACATTCACATTGGTCTTATCCAAGTCGGAA TAAAGCCTTTAACAAAAGAAGGTCTAGACACTTCTATTTTAGCTGTCTTAAGAGATGGGC GATTCATCTCTTTTGATGATTCATTGCTAAGTAGCATCGAATCTAGTCTCTGTAAAGGTC CAATTTCTTTTGATTGTTATCCTAATATAACAATTTCTCTTAAAGACAAAAATATTTTAA AAAGCATGATTTTACAAATCAAAACCCATAATTATAATATGGTCAAAGGGTCTATCCCAG TTGCTTTAATTTTTAAAATTTCATACAAAGCTATGGTCTCTGCGTTTAGTACGCAACACA AATTCCAGTCAAAAAGAGATGAAACTCTCCTCTTGCAGACTGACTTGTCTAAAGCAAACA CTGTCATTCCGAAGCCAATCCAATGGAAAGATGTCAATCTTCCAGAGGAATGGATTCTTG AAGGAGCCGCCCCACCGGCGATTCCGAAACAACTTGAGCCCAATACAGAGTTGCAGAATG TGACTCAGTATTCCGATGGTAAAGTCAAACTATCATTCAGAAGGTCTACCTCATCCAGAT TTTCTGATAAAGAGTCGTGCTCAAGCATTCCTTCACTAGAAAGGAAATTTACAAAAATAC CCTCTGTTATAAATCTCCCTTTTCAAAATACAAAGAGTCAACCTAGGTTTTCTACTTCAG ATATACCTAGTACCTCCATTCGATCAGTTGATTACACCACTAGTGTTCCTCATCCGATCT ACACTAGTAATCAACATGTACAAAGTCAGGAAGAGAAGGAATCTTCTCCTCCAACATCAC CTACGTTTTCTGCTGTTACAGAAAATGTCATTAATGTCATTGAAAAGGAATTTGAATTGG ATAAAACTCTTCTGCATAACGATTTTTATTCTGATTTAAACAAAGAAAAAAGACTTTGGT TTTTCAAACATTTTTTAAATCAAAGAAAAGAAATCCAACAAATCTATTATGAATTTGTGA ATTTTCATAAAGTTCATATATTGTTTTTTGATTGGTTCGAAATATATTCTTCTGAGAACA ACATTGATTATCCTTTTAAAGAATCAAACCCTATTACTATTAGGAAGAAAATTCCTGAAT GGAAACTTCTTGATAGTGATAGAACTCATAGAGTCTGAACACCCACCTCTTCGGAGTGTA ACCGTTGATCACGGTGAACCTCCTGTCCAAATTAGAGCTTCACCTTACAAAATTCCAAAA CCAAATGATTCTGAAGCCAATTTAAGTAGTATTATCCAACAGAATAATTTCTGTAATACT AACTTAAATACAATCGGAAAGCAGTTGACTAGGATAGAAAACCAATTCCAGAAGTCAACC ATTACTGTTTCTTCGATTTCTCCTATTCTACCAAAATCGGATTCTGACAAAAAGCTTAAG GAACCTATTTTCAAACCTTTTCAGGTTTCGAAAACTAGTCAAAAGCTTGTTCAAGAGTCA AAATCAGATTTTGCTAAAGCCATTAGAGAACAACTAGATAGGATAGAAGCTGCTTCTTCC TCATCTAGCAAAGTTCAGATAGCCCCTGATACTCCTCAATCTAGCAAGATTGGAGTATTA GAACAAGACCAAATGTCTATAGCCTCTTCTGATATAGAAGCTTTCAAAGAAGAACCTTCT ACTCCTAAAGCCAACAAAATTCATTGGGAATTAGCCCTTCCCACTGTCAAGACTCCACCA GATCTAGCAATAGATAATAGACCAAGTGCATTAAATCAATCCCGATACAATGCATCTTCA GTCTATGAGTGGAATATTGACGGTATGTCCGAATACAATATCCTAGGATTGTTGCAACAA ATGACAATGGCAGCCAATGCCTATAAAACCCAAGCAGGAACTTCTGATCGTGCCATATCA GAAATCCTCATTGCCGGTTTTACTGGTCAACTAAAAGGTTGGTGGGATCATCTTCTCACT AATCAGCAACAATTAGACATTCTAAATTCCATTCAAGTCGATGAAAATGGAGCCCCTATT CTTGATGAGTTCAACAATCTAATTCAGGATGCTGTTGCTACTCTAATTTTAACCATTTCC CTCCATTTCATTGGTGACCCTTCACACCTTCGTGATAAAAACGCTGAGTTACTACATAAT TTAAGATGTAGGAAACTTAGTGAATTTCAAAGCTACAAAACCTCATTTTTTACCAGACTA TTTCTAAGAGATGATGCAAATCATATAACTTGGAAAGAAAAATTTCTTGCTGGATTACCT ACCCTTCTAGGTGAAAAGGTAAGAAATTCTATTAAAGCCCTTTATGATAACCGTATTCCT TATGATGAGCTCACCTACGGTGAACTTGTCAGTTTCGTCAATAAAGAAGGTTTAAAGATT TGTCAAGATTTGAAATTACAGAAACGACTTAAGTGGGAGCTTAAGAAGTCTAAACAAGAA TTAGGCGGTTTCTGTAAACAATTCAATTATGACCCCTTTAAAACTTCTATCTCCAAAGAT TGTAATGGTGAGTGTTCTACTAAACCTCGCAGGAAACATTACAAATCTAAAAATTTTAGG AAATCCTTTCGTAATTTTAGAGAACTTCCTTATAAGAAACCTTCGAGGCCTTATAAGAAA CCCAAATTCTCTAAAAAAGAGTTTAAAGCCAAACCAAAGACTCCTTTCAATTACAAAGAA GCTATATGTCATAAGTGTGGCATAAAAGGTCATACTGCAAAATATTGCAGGATGAACAAA AAGCTTCATGAGCTTGACCTTGATGATGAGATCCTTTCCAAATTAGCCCCTCTTCTTATC GAGTCTTCTGATTCCGAGTCTTCTATGTCAGGAGACAGTGATCCATATCAAGTTGATGAG CTATTTGACTCAGATGACTCTGCATCTAGCAGTAGTGAATCTAAATCTGATTCATTTTTA AAGAAAATCAATGTTTTGACTAAAGACCAAGAAACTTTTCTTGAACTTGTAAAGCATATT TCTGATCCGAATCTTCAAAAAGAATATCTTGATAAACTTTTGAAAACTTTGGATTTTAAT AAAGCCGAGACTTCTAAAGTCCCAATTGTTAAAAAGAATTCTTATGATCTTACTCAGATT TTGGATAAAAAGAAAACAAAGAAGTCAACACCAACAATTCAAGATATTCAAAAAGAAATC AAAGACATTAAACTTGAAATAAAGGATTTGAAAGAAAAACAAAAAAGTGATTCTGAAACT ATCCAACTTCTTTTACAAAAGCAATTACAAGATAATTCGGATAATGAATCCAATTCTGAT AATGGTGATAAAAATGATCAGAACTTAGAAAACATTGAGTCTGTACCCAATGATTTTCTA TTTGTTTTAAAACAAATCACCACAAGAAAGTATTTGATTAAAATCACTTTAATTTTTTCC AATGATTTTGCAATCGACGCCATTGCCCTTGTTTGACACTGGTGCCGATTTAAATTGCAT AAGAGAAGACATTGTCCCCAAAAGATTTCATGAGAAAACAAAAGAAAGACTTTCTGCCGC CAATAATTCAAAACTCAATGTCACCTCTAAAGTTGAAGCTTCAATACATAATAATGGATT CAAATTCAGAACTTCTTTTGTTCTTACAAATGACATACATCATGCTATCATTTTAGGAAC TCCTTTTATAAATCTTATAACCCCATATACTGTCAACTACGATAGTATATCTTTCAAAGC AAAAAATAAAAAATTTGTTTTCCCGTTTATTGAAAAACCAAAAACAAGGAATTTGAATAT TGTTAAAGCCTGTTCTATTTATCAAAACCAAATCAATAACATGCTTAAATCAAAACAAAA TAATTTAATTTGTTTAAAAAAGGATTTAATTCTACAAAGAATTGAAAATCAATTACAAAA TGATTTCATACAAAGAAAAATCTCCGATTTCAAAAATCTCATTGAAAAAAAAATCTGTGC TGATCTACCATCTGCTTTTTGGAACAGAAAACAACACTTAGTAGATTTACCTTATGAAAC TTCTTTTAATGAAAGACAGATCCCCACTAAAGCACGTCCAATCCAGATGAACATGGAATT GGAACAACATTGCAAAAATGAAATAAAAGATTTAGAGTCAAAAGGACTCATTGTAAAGTC AAGATCCCCATGGTCTTGTGCCGCGTTTTATGTTAATAAAAATTCTGAAATTGAAAGAGG CACACCAAGACTTGTAATAAACTACAAACCTCTTAATAAAGCATTAAAATGGATTAGGTA TCCCATACCTAATAAAAAGGATTTGCTTCAAAAACTATGTTCTGCTCTTATTTTTTCAAA ATTTGACATGAAATCTGGTTTTTGGCAAATTCAAATTCATCCTAAAGACCGTTACAAAAC TGCTTTTACTGTTCCATTTGGACAGTATGAATGGACTGTCATGCCCTTTGGTTTAAAGAA TGCACCCTCAGAATTTCAAAGAATTATGAATGATATTTATAATCCTTATTCTGATTTTTG CATTGTTTATATTGATGATGTGTTGATTTTTTCAAATTCAATCGATCAACATTTCAAACA TTTAAAGACTTTTTACCTTGCCACCAGAAAGGCTGGATTGGCAATTTCTAGTTCTAAAGT TTCTTTATTTCAAACAAAAGTCAGATTCCTTGGTCATCATATTTCTAAAGGAACTATCAC TCCAATCGAGCGATCCCTTTTGTTTGCAGATAAATTCCCTGATAAAATTCTTGACAAAAC CCAATTACAAAGATTTCTTGGAAGTCTAAATTATGTTCTTGATTTCTGTCCTAACATTAA TAGGATGTCTAAACCCTTGCATGATAGGTTAAAAAAAAATCCTGTTCCTTGGACAGATGA ACATACCAAAGTTGTTAAACTAATAAAGAATTCTGTAAAAAACATCCCATGTTTATATCT TGCTAATCCTGCATTACCTAAAATTGTTGAAACTGATGCATCAGATTTAGGTTATGGAGG CATATTAAAGCAAAAAGAAAATGATAAAGAACAAATAGTACAATATGTTTCTGCACATTG GAATGAATGTCAGAAAAATTATTCTACTATTAAAAAAGAAATTCTTTCCATTGTTTTATG CATTTCAAAATTTCAAAGTGATTTATTAAATCAAAAATTTTTACTTAGAATTGATTGCAA AGCTGCAAAACATGTTTTAGAAAAAGATGTTCAAAACATTGCATCAAAACAAATTTTTGC ACGATGGCAAGCCATTTTAAGTGTTTTTGATTTTGATATTGAATATATTAAAGGAGATAC AAATTATATTCCTGATTTTCTAACTCGGGAATTTCTTCAAAACAGATAATGCCGCCCAAA AGAAGAGACAAAGGAAAAGGCATAGCCAAAGATCCTGAACCTAAAGCCACTCCAAAAGAC TCCCAATCTTCTCCTCCTAAAGAAAAACTACTATCATCTGCCATGCCAATCAAATCTTGG ATTGACATGATCCAAGATGAAGAAGCAAAATCTAAAGCCCTCTCTACCCAAGAGCAAGTA AATCAATGGATGAAATCCATTTCTAAATCACCTGAGCTTATGCTCGCCCTACAAAGCAGT CTCTCCCAAAGCCAAACTCCTCCAAAAGAAATTTCTGAAAAAGAAAGCCCAAAAGAAATT TCAAAATCTTTTTCCCAAAATGTTGTTGTTTCTGGTGAAAGCTCGTCATCTCAGATCGTT CTTTCACAACCAACACAGAAAACTTCGGTTTGGTTTGATAAAACCCATTCCCAAAATATT TTAACTATTGAAGAAGGGTTTTACCATTCTGATCCATTTCAAACCCTTACAAAGTTTTTC CCTAAAGGCTGGTTTTTCAAACCATGGGATTTAACAAAACCCCAGCCTTACTATCAAAGC ATTTTGGAAGCCACTGAATCCGTTAAATTCAAACATTTTTTCCTCAGTGACTCCCATTCT GAGCCGGCCTATTCAACGGCTACAATTTTAAAAGTTTTGAGCCCAAAACAATGGGGTGAT CTACTCCATAATCAAAAAAGATTTCCCTCCAATTTTCAAATGCGTTTACCACATTGTTTG ACTTTCTCCTACTGGGATTATCAACAAGCCTGGTACAACACATTCTTCTTACAAAACCCT AAAAAATCCCATTCATGGTTATTTTTCTTTAATTCCAAAATAACCGTACAAAGCCTTCCT AACTGGTTTAAACAATGGTGGAACCATTTTGGCCCAACTCCTGATATCCTTACACCAAAT GCCACCCACTGTTTAAATTTGTTCAAAGCCCATTATAATCCCTCTGAATCAGAAAAAAGG TTTTCGCCTTTCTTCTGTTTCTGTACAAACTTCTTTCTTCCTTGGGTTTGGATGTGGAAC CTCAAATACCACACTCAAGATGCCCAAATTATCCTACAAAGAACCTTTAAAGTAAAATGG TGGTCAAAATTTGACGAACAGTCAAAATTGACTGACATTTTGATCCGAAATTGGCTCTCT GCCAAAGGATTTCTTCAACCGACCATTAAACAATCCAAAGCCCACCAAACTTTCTTGAGC CAAAAAACAAAAGCCCAATCTCTCCTTGCCAACGCCAAGACTGAAGAAGAATACTTCAAT GTCATGCAACAACTTCTCGCCACAAGGTCAGAGACATCTGTTGCAACTTCCTCTTCAAAC ACTTCAGGAGATGAAGAACCTTTTATTTCTCTTGGTGATGAAAATGAAGATGACTACTTC GGCATTTTCTCTCCAATAAAGCATTAAAGCTGTATTAAAGCCAATTTAAAACTTTACTTA TTTGAATCTATGTACAAGTTTTGTACTTAAAAAAAAAAAAGAGTTGTTATTTCCCAATTA TTCTACTTCTGGGTGGTCCTATGGACACAAGTGAGAGCGCACATGTCTCTTCACCCGGGG TATATTCTACATCCGCAATATTCCAAAAAACGACACAAAGACTACAGTTACAGACGATCC AAAGATTACTGTGCACTCAAAACTCCGCTACAGTGAACAGTGCAAAGTTCCAAAGATTAC TGTGCACTCAAAACTCCGCTACAGTGAACAGTTTAAAAAATTTTGTATAAAAACCGAGAG GAAGACTTAGACTCCTCAGGTTTTTCATTTCT >CclemV_scCc4 [endogenous-virus-name=Citrus clementina virus] [strain=sequence cluster Cc4] [host=Citrus clementina] [moltype=genomic DNA] [note=incomplete genome, mutations in ORF1] 7239 bp TGGTATCAGAGCCAAGGGAAGGATAGTGTAATATAGAATAGAGACTTTATGTTTAAAGAC TTGTATTTTAGTTAAATATTGTTTGTGTGGTGAGTGTTACCTCTGGGTGCCTTGGTAGTA TTTGGTTGTAAGTCCCGATTTGGTTGAAGGGCAGTAAAACCAATTCTTAGCCTTGGATTG TAGCCATACCTACAGGACTAAAACTAGAATATAGGTTTTTATCCATGGATTCTCTACTCT GTAGAGCATCATCCTTTTCTAGCTCTTCTTCTGGAAGAACTAGTGATTCAAAGAATGTTG TGAATTCGGAAGAATTTGTAATTGAAGACTTTAATAAAGCAATTGATAATTGGGAATTAC CAAAGGTTTCTAAAGAAATGATTTACAAAACAAAAAAGCTTGATTTTTTAAAGAATGATT ATGTTATAAAAACTGAAGAAAGAGACATAACCCTTTCAAAACCTTTTGAAACTATTCACT TGTTTTCAGAACAATCTTTAAAGAAATTAAAAGAAAAGAATTTTAATTATGTTCACATCG GTTTAATCCAAGTTGGAATAAAACCATTAACTAAAGAAGGATTAAATACTTCAATTCTTG CTGTCCTTAGAGATGGAAGATTCATCTCCTTTGATAATTCTTTACTAAGTAGTATTGAAT CAAGCCTCTGTAAAGGACCCATTTCATTTAGCTGTTATCCAAACATAACAGTTTCTCTAA AAGACAAGAATATTCTGAAAAGCATGATTTTACAAATCAAAACCCATAACTATCACATGA TTGAAGGATCTGTCCAAGTTGCCTTAATTTTTAAAATATCCTACAAAGCCATGATTTCTG CGTTTAACACGCAACATAAATTCCAGTCAAAAAGAGATGAGACTCTTCTCTTGCAGACTG ACTTGTCTAAAGCCAATACCGTTATTCCAAAACCAATCCAATGGAAAGATGTCAATCTTC CAGACGAATGGATTCTAGAAGGAGCCACTGCACCAGTGATTCCAAAACAACTTGAGCCAA ATACAGAGTTACAAAATGTGACTCAGTATTCAGATGGTAAAGTCAAACTATCCTTTAGGA GATCTACATCATTTAGATTCTCTGATAAAGATTCATGCTCAAGTATTCCTTCATTAGAAA GGAAATTTTCAAAAATTCCTTCTGTTATAAATCTTCCTTTCCAACCAGTAAAGAGTCAAC |