TTAGTTAAAAACCTAACCCAGGAAGTTATTTTAGGTACTCCATTCTTCACTCAAATTTAC
CCGTTTAAAGTAACAGAAATAGGAGTAACTACAAAAGTAGTCGGAACAAAATTATTATTT
AACTTCCTTTCGCCAATGAAAACAAAAGAAGTATTATGTTTACAACAAAATACAATCCAA
AAAACAATAAACTTAATTAAAAGTAAACAAAATCATATTCAATATCTACAAGACGAAATA
TCATATAAGAAAATAGAAGAACAATTAAAAACACCTTATATAACAGAAAAAATAAAAGAA
ATAGAAAACGATTTACTAAATCAAGTATGTTCCGATCTACCAAATGCATATTGGGAAAGA
AAACAACATGTTGTCGAACTCCCTTATATAAAAGAATTTAATGAAAAAATAATACCAACA
AAAACACGACCTATTCAAATGAATAAAAAATTATTAGAAACATGTAAACAAGAAATAAAT
GATTTATTACAAAAGAAACTAATAAGACCTTCTAAATCTCCTTGGAGTTGTTCTGCTTTT
TATGTAAACAACCAAGCCGAAAAGGAACGAGGTGTTCCACGACTTGTAATAAATTACAAA
CCGCTTAATGAAGTATTACAATGGATACGATATCCCATACCTAATAAGCGAGATTTACTA
AAACGACTATATAATGCAAAAATCTATTCAAAATTCGATATGAAAAGTGGATTCTGGCAA
ATACAAATTGCTGAACAAGATAAGTATAAAACAGCTTTTACAGTACCATTCGGACATTAC
GAATGGAATGTAATGCCCTTTGGACTTAAAAATGCACCATCTGAATTTCAACATATAATG
AATGATATATTCAATAACTATTCAAATTTCACGATAGTTTATATTGATGATGTTTTAGTA
TATTCAAACTCAATAGACCAGCATATTGCTCATTTAAAAACTTTTATAAACATCGTTAAA
AAACAAGGCTTAGTAATATCTGCTAAAAAAATGCACTTATTTCAAACTAAAATAAGATTT
TTAGGCCATAACATATACCAAGGAACGATTACACCAATTGTAAGATCAATTGCATTTGCA
GATAAATTCCCAGATGAATTAAGAGAAAAAACGCAATTACAAAGATTTTTAGGATGTTTA
AATTATGTATCCGATTTTTTACCCAATCTGAGAAAAACAATTCAACCTTTATTTCAGCGA
TTACAAAAAATCCAAAACCCTGGTCTAGTATACACACAAATTTAGTCAAACAAATTAAGG
CGAAAGTCAAAACTCTCCCTTGTCTATCTTTACCAAATCCTGAAGCCCATATGATAGTCG
AAACCGATACTTCCGAAATAGGATTCGGAGGAATATTAAAACAGAAATTCCCTGAGTCAA
ACCAGGAGTCTATAGTTAGATTCCATTCAGGAGTTTGGATAGGACGCCAAAAATCTTATT
CTACCGTTAAAAAAAGGTCATTTCTATTGTCAACTGTATTTCAAAATTTCAAGATGATTT
AATAAACAAACATTTTTTGTTAAGAGTCGATTGCAAATCAGCAAAAAAAAATTTACAAAA
AGATGTCAAAAACTTAGTTTCTAAACAAATCTTTACCAGATGGCAAGCTATTTTATCTGT
TTTTGATTTCGATATACAATATATTAAAGGAGAACATAATTCTTTACCCGATTTCCTAAC
AAGAGAATATTTACAGGGCAAATCAACTAGTATTCAATCACAAAATACACAAGATGGCTG
ATCAAAAACAAAAGAAACCGATGACTGCATCAGATTATATCAAGAAACAACCATCTCTTC
AAGGAAAACCCTTACCTATCCAAAACATCTTTTCGGCTCTTGCTGAATTCCCACCTTTAT
TCTATTCAAAAGCTGTTACTAGTGAAGCTACAACCCAAGCTTCCACCGCTACTCAAAAAC
AAACTCCACCCACTTCAGAAAAATCCGCCTATTTTGTTAAACCACACAAACAGCACCTCC
TAACCACCCAATTCCTCAAACCTGTTACCCTTAGAGAACTTCAAGCTTTTACCAAACGTA
TCTTCTATGAAGATAGCCTATACCTAACAGATAATGTTACCAAAAACTGCACCTTTTATG
AGTATATTCTAGTAGACTCTAAATCTGCAGAAATTACTCATTATCCAGATAAGACCAACC
CAAATCAAATTGCCTATTCTACTTGCAAAATCCTTCGTGTTCACTGTATCCAAGATCTTG
GTTTCTTCAATCTCCATACTACCAAATCTTTTTCCTCTCCAGGCTTTCATATCCAAGGAT
ACTCCTACATGGATTATCAATACGCCTTTTTCCGGGCATTATACCTTCGGGCCTTTTTGA
CCATTCATGGTTTTTATCCTTCGATACTCGATGCCCAAAAGGAATACCTGGATGGTTCTG
TGAATGGTGGTATTGGTTCGGACCTACCGACCAAATCTATCCTTCAGAAATAATCAAAAC
AAGCCTCCCCTTTTATTCCAAACACGTAACAAAACAAGATGTTGGCCCTTTTACCACAAT
AGCCTTCCACATTGAGATGGGTCTCCCATGGATATGTTCTTGGCACTTTAACCTTGATAT
CGTCCTACCTGGTATGCCTTTCTCCCTAATCAAAGAATACCGTGTCAAATGGTGGGACAA
GTATAACCTTGATCGTTGTTCCATCTCCAACATAGCCAAACACTTTCAAATCCTTTCTCA
AACCCAAACCGCCATACAATCCGTTTCCAAATCCATACCTCTCCTTACTCCAAAACAACT
TATCCAAAAATTTGGCTCTGATCCGAAATCATCTCAGGCCACTCCCACTCCACACCAGCC
GCCTAGTCCGCTAACTCGACCGGCTCCTCCACCTCTAAATCACAAAAAAAAGCAAAACTT
CAACAACTTCTAGCCAACTTGGTCCACCAACTCGACTCCTCCGACGAGGACGATGACGTT
ATGCAAGACTCCGATCCTTTCGGTGGTCCCTTCGCACAAGACCCCTTCGCCGAATAATAA
TAAAAAAAAAAAAAAAAAAAAAACCCAATAGTATTGTATAATTTTCTGTTTTTCTGTTCA
TTCTAGTAGACTCTGTATATTATCTTCCTATATAAGACTCTGTATACTATCTTCCGATAA
GGTATGTCGAATAACATACAGAGTATATCAACAAAGAAGACAACAGCAACAACGACATTA
ATAACAAGCAATGACGTAAGCAATGACGAATGCCATGACGTATGCAATGACATAAGCAAT
GACGCACACAAAGTATCGGCACCACTACAAGACGACACGTGTCCTCCCAACTCACGCAAA
GTGTCGGCACCACTACGAGACGACACGTAGCAAGACCAGCAACTCCCTTCTTCCGCTATA
AATACTTACCTCTACCAACGAAGAAGGGCAAGCGATTCTCGCACTACTTTCTCACTCTAA
AAAATCCTCTCCAAAACATTCAAACGAATTTTTAAGTTTTAATATTTTCTCTTCGATCAA
ATCTTGTAATCAAATCTGTAAGTT
>BrapV [endogenous-virus-name=Brassica rapa virus] [host=Brassica rapa cv. Chiifu-401-42] [moltype=genomic DNA] [note=incomplete at 3’ end, mutations in ORF 1] 7881 bp
TGGTATCAGAGCCATGGTTGGGTAGGCGTCTAAAGTTTTGGGTGTTGGTGATCTATTAAT
TTTTCCTCCCTTTGGTTCTTATAGGTTAAAATCTTAGTCCTCCTGAGTGTTTTTGCCGGT
CTAGACAAGGTCCTAAGTCCCGTAGGTGTTGGGAAAACAAAACCTCTCTTTAGACAGGAT
TGTAAGGAGTCTTAGATTTTCACCTTTATCATCAAAAATGGAATCATATTTTAGATCTTC
ATCATACAAATCCCAATCCGCCTCTTCTTCTTCCAGATCGGAAAAGAAAGCTATAAAAGA
TTCAAAAAAGATAGTAACTAGTCAAGAAACAACTATAGATGATTTCCAAGGATCAATTGA
TAATTGGAAGATTCCAAGAGTTCATAAAGATCAAATTTACCAAATCTCGAAAATGAATTT
TCTAAGAACAAATTTTTCTATTAAAACTGAGGAACGTGATATTCAACTTACAAAACCTTT
TGAGACAATTCATTTATTTTCTGAAAATGCTTTACAAAGGCATAGAGAAAAAAACTTTAA
ATATATTCATATTGGCTGGATTCAAGTCGGCATAAAACCTCTTTCAAAAGAAGGGTTAAA
TACTTCAATATTAGCTATTTTAAGAGACACACGATTTAAAGTATTTGAAGATTCTTTGTT
AAGCTCGGTTGAATCTAGTTTATGTACTGGACCAATTTCATTTGATTGCTATCCAAACTT
TACTGTTTCTCTAAATGACAAAAATATCTTAAAATCTTTGGTGTTACAAGTTAAAACCCA
CAACTATGAAATGATTGAAGGATCAATTCCAATTGCTTTGATCTTTAGAGTTCATTACAA
AGCTATGACAAGTGCATTTTCTTCAAAGGTAAAACTTTCCAGCAAAAAAGGGGAGACCCT
GTTGCTTCAAACTGATCTTTCAAGATCCAACTCCGTTATTCCGAGATCCATCCAATGGAA
AGATATAAATCTTCCAGACGAATGGGTCCTCGAAGGAGCGGTCCAACCAAAAATTCCTGC
ACCCCAAGAATCTATAGAACCAAATACACGTTTAAAACATATTGAGCAATTTCGTGATGG
AAAAGTAAAACTGTCTTTTATCAGAAATAACCAAGATAGGATTGATGAATATTTGTGTGG
ATCTTCTTCTAACATGTGTGAATCTTCTTCTAATCCAGAAACTATTGATTTAGGAAGAGT
CTCACAATTAGGTCATGATTTTCCTAGAGAAGAAAAGAGTATGAAATTCCGTCCCCGGTT
TTCAACCTCGGATATTCCAAATTCTGTTTTAAGAAATGTTAATTTTCAGTCACAGATTCC
AAAACCGGTTTACTCTGCGGAAAACGATCTTTCACAAAATGAATTTATTACAAAATCTGA
GCCAACAAGTCCAACTTTTTCAGCCATTACAGATAACATGTTAAATGAATTAAATGTTTT
AGAAAAAGAATTTTCAATTGACAAAGAGTTTTTAAGAGATGATTTTTACTCTAAAAATAA
TAGTCAAAAAAGGCTTTGGTTCTTCAAGAACTTTTTAAAAGAAAGAAATAACATTCAGAA
TGAATTTTATGATTATCTTCAAACACATAAGGTACAAATTTTATTTTTTAATTGGTTTGA
AGATTATGCTTCTAAGAACAGTATAAATTTTCCTTTTTCTAAAACAGTGAATCCAATTAC
CAATCGCAATAAAACTCCTGAATGGGAAACACTTGCTAATGGTAAAATTATTCGCTCAAA
TCATCCTCCTCCCCAAGGGATAAAGCTAGATTGGTTAGGAACCCCAATTGAAGCAATTCC
TTTTAAACGACCCCAAGAAGATGATAAAGCTAATATAAAAAATATCATTGTTCAAAACAA
TTTTTCAAACACTAATCTTGGTACAATAAGCAAACAACTTGATAGGATTGAAAAATCAAT
CCAAAATCAAAACCCCATTCCAATGGAGTCTCCTTCTGAAAAGAAAAACAAAAGTCCCAT
GTTTAAACCTTTCCAAATTTCCAATTCAAGTGTCAAAACTTACCAAGACACAAACCTTGA
ATTCATTCGTGCCCTCCAAAGTCAATTAAGTAAAGCTGAAATAGGAGATAGTAGCATGCC
ACATATTTCTGATATCCCCGATACTCCTACATCCAAAATCCAAATAAACACTCTAGCCAA
TGATTCAGACATTAGTGAATGTTCTGATAAAAATTCTGTCTCAAAAATAAACCGTCTTGA
TAGGCAAAACCATAAAGATCGTCAATTAATCTCAGCCCCTGATCTAGGACAAATCCAACC
AATAGAGCAATCTCGATTTAACTCATCATCAGTCTATGACTGGAATATTGATGGTATATC
TGAATATAACATTTTAAGTTTCCTCCAAAAAATGACAATGGCCGCAAACGCTTATAGAAC
CCAAATAGGAAATGAGGATAAAACCGTAGCTGAACTCCTAATAGCTGGCTTTTCGGGACA
GCTAAAAGGATGGTGGGATAATTACCTAACCAATCAGCAACGAACAGAAATCCTAGATTC
AATTAAAACGGATGAAGATAATGTACCAATCCTAGATAATCTCGGAAATCCTCAACAAGA
TGCTGTTGCTACTTTAGTCATAGCCATAACCTTGCATTTTATAGGAGACCCCTCGGTCCT
TAGAGATAAAAATGCTGAACTCCTTTCAAACCTTAAATGCAAAAAACTAAGTGATTTCCA
ATGGTACAAAAACACATTTCTTACTAGAGTCTTACTCCGTCAGGATTCTAACCAACCTTT
TTGGAAAGAAAAATTCCTAGCTGGCCTTCCTACTCTCTTAGGAGACAAAGTTAGAAACAA
AATTAGAGATTCCATGGGAACCCAAATAATAGATTATGATGATTTCACTTATGGAGAGTT
GGTCAGTATTGTTCAACAAGAAGGTCTTAGGATATGCCAAGACCTGAAACTCCAGAAACA
TCTTAAATGGGAACTCAAAAGAACGAAAGTAGAATTAGGATCATTCTGTAAACAATTTGA
AATAGACCCCAATCAAGGTAGTAAATCTTGTGTAGGAGATTGCAACAAAAACTACTACTC
TAAAAATAAGCCTAGAAAACATTCTAGAAACTATAAAAGTTTTAGAAGTCGTGAAAATTC
ATGGAAAAAACCCCAAAACAAATTCCCTTCAAAGGAAACCCCAGCCAAAAAACCTTTCTA
TAAAGATCTTACATGCTTCAAATGCAATAAGAAAGGTCACACTTCAAAGTTTTGCCGTTT
TAATCGCAAAATCCAGGAACTAAACCTCGGAGAAGAAATTTCAAATAAAATAGATAATCT
TTTACTAAATGATTCCTCTTCGTCATATGACTCTGACTCATCCGTGGCTTCTGAAAAGGC
CCTTCAGGTTGATGAACTAAATAGTTCATCATCTAGTTCAGAGTCAAATGAAAAGAATAT
CTATGTCCTCACTAAAGATCAAGAATTACAACTTGAAATATTAAATTCCATTTCTGATCC
AAGCCTAAAACAGAAATTTCTTGAGAAAATCATTTCCTCTTTAAACGAAAAAGATGATAA
AAACATAGATAATTCCCCAAAATCTCATGGTCCAAGTTCCTCCAAATCCTCTTATGATCT
CACCACTATTCTCAACAAAAGAAAGAAAGACACCTCGAAAACAACAATACAAGATCTTAG
GATTGAAATCAAAGAAGTAAAAAATGATCTAAAAATCCTCAAAGAAAAACAAAGACAAGA
TTCTGAATATTTTCACTCGATCATATCTTCCATCAAAGATCCTCATGATTCTAGTTCGGA
AGAACAAGGAAATGATTGCCTAAATAATCAAGATGAAAATCTCAAAGAACAAATTCAATC
TCTAGATATGGCCCCTAATGATTTCCTTTTCGTTCTACGAGAAATAACTTCTCGAAAATA
TAAAATTAGAGTCACCATTGTTTTTTCTGAAAATTACAAAATTGACACAATTGCTTTGTT
CGACACTGGTGCAGATCTTAACTGCATCAAGTCTGGGCTTGTTCCAAAATGTTTTCATCT
AGAAACTAAAGAAAAACTATCTGCTGCAAATAACTCTAAACTTCGTATAACATCTAAAGC
AGAAGCTTCAATATTAAAAGAAAATATTCTTATTAAAACTGCATTCGTTCTCACAGATGA
TATATATCAAAATGTTATTTTAGGAACACCATTTATTAATTTGATCACACCATATAAAGT
TATGGATGATAAAATTTCCTTCAAAAATCAAAATATAAAATTATCTTTTAAATTTCTCGA
AACACCAAAAAAGCGAAGTCTAAACTTAATAAAAGCTTGTTCTATACAAGAAAACTTTCT
AAACTCTTTAATCCATAGTAAAACCTTCCACCTAGAACATTTAAAATCAGAAGTTTTACT
TCAAAAAACCTTAGAAACCTTAAATTCAAAAGATATAAAAGAAAAAATTTCAAACTTAAA
TAAATTATTTGAGAAAGAAATTTGTTCAGATTTACCAACTGCTTTTTGGAATCGAAAACA
ACATATTGTTGATTTACCTTATGATGAAAATTTTCTTGAAAAAGAGATTCCCACAAAAGC
TCGTCCAATTCAAATGAACTCAGAATTAGAAAAACATTGTAGAAAAAAAATTTCGGATCT
TCTAGAAAAATGATTAATTTCAAAATCAAGATCCCCTAGGTCTCGTGCTGATTTTTATAT
AAATAAAAATTCTGAAATTGAAAGAAGAACCCCAAGATTAGTAACTAATTACAAACCTTT
AAACACTGCTTTAAAATGGATTGGATATCCAATACCAAATAAAAATATTTACTACAAAGA
CTTTACTCTGCCCACATATTCTCAAAGTTTGATCTAAAATCAGGATTTTGGCAAATTCAG
ATATCTGAAAATGATCGTTATAAAACAGCATTTACAGTCCCTTTTGGTCAGTACCAATGG
AATGTAATGCCATTTGGTTTAAAAAATGCACCTTCTGAGTTTCAAAGAATCATGAATGAT
ATATTTTCTGATTATTCAAAATTTTGCATTGTCTACATTGATGATATACTAATATTTTCA
CATTCTATTGATGAACATTTCAAAAATCTCAAAACATTCTATTACGTTGCTAGAAAAAAT
GGTCTTGTTGTTTCCAAAACAAAAATGTCCCTATTTCAAACAAAGATCAGATTTTTAGGT
CATTACATATCACAAGGTATGATAACCCCTATTGAAAGATCTTTAGAATTTGCAAGTAAA
TTCCCAGATAAAATTATTGATAAAACTCAATTACAAAGGTTCCTTGGAAGTCTCAATTAT
GTTTTAGATTTCTGTCCTAATATAAATAGAATAGCTAAACCGTTGCACAATCGTCTAAAG
AAAAATCCAGTTCCTTGGACAAAAGAACATACTGAAATAGTTCAAAGGATTAAAAAACAG
GTCTTAGAAATCCCATGTCTGCACATAGCAGATCCGGATTTAGAGAAAATCGTAGAAACA
GATGCTTCTGATATAGGATATGGGGGTATTCTTAAACAAAAGAAGTTAGATGGTCACGAA
AGTATTGTGCAATTTACATCATTACACTGGAACGACACTCAAAAGAACTATTCTACTATC
AAAAAAGAAATCTTGAGTATAGTTTTGTGTATTCAAAAATTTCAAAGCGATCTTTTAAAT
AAAAAATTTCTTTTAAGAATTGATTGCAAAAGTGCTAAAGATGTTTTACAAAAGGATGTG
AAAAACCTTGCATCAAAACAAATTTTTGCGCGATGGCAAGCGATTTTGAGTATTTTTTAT
TTTGAAATTGAATTTATAAAAGGAGATTCAAACTTTGTCCCAGATTTCTTGACAAGAGAA
TTTCTCCAAAACAGGTACAATGCCTCCGAAGAAGATGATTGACAAAGGCAAGGGAATTTC
CCTGGAACCAATCTCAGAAAAACCCGAACCTACAAACACTAACCCAAAAACAGAACCCTG
GATCTCAGTAACAAAAAAGAGTGCTAAAAAGGAAGAAATACCAACCACCCCAAAATCTCT
CCAATCTCCAGAAGCTATCATGAATCAAATGTTACAATTGCAAAAAGCTTTCGAACTTAG
TTTTTCAAAGCAAGAGTCGGGAGAATCTTCCAAAAACCTTCCTTCTCAAGCTATTTCAAA
AAATAACGAGGTCCCTTCAAAAATGATTTCAAGAGAAAACCAGACCTCAAAAATTGTTTC
AAAACCTTCAAATAATTCACAAATTATTTTGAAGGAGATTTCCCAAACCACTCCATCGGA
GTATTTTGAAAAACACACATACCAAAATATTATAAATATCGAAAAGGGATTTTTTGTGAA
CAATGATCCGTTTTTAACAATCGAAAAATATTTTGGCAAAAACAATTTCTTTAAACCACA
TAATACAGATAAAACTGTGTTATTCTTTCAAACCATTTTGGAAATTACAGATTCAGTGTC
CTTCAAACATTTTTATCTAAACGAAAACCACACTGATGCTGCTTATTCCACATTCAAAAT
CCATAAAATCATTGCGCCATGTGATTGGGAATATGATCTTAACGACAATCTAAATTTTCC
AGAAGATCTTAAAAATCTCCCTTGTTACAATGTCCCCTTTAACTATTGGGATTATTGCCA
AGCATGGTACAATTCTTTTTTGATCCAATCTCCTAAACACAAACACACGTGGTTGATCTT
CTTTGACACCACCTGTAACTTATCCAAATCTCCCTATTGGTTCATACCATGGTGGAACTA
CTTTGGTTCTGTCACAGAAATATTTAAACCCAATATCCAAAAATCATTCCAAATCTTCAA
GACAAATTTCATTCCGTCTGAAGAAGAAAAGAAATTTCCCCCACTAGCCCTCTTCCACTC
AAAATTTCATTTTCCTTGGGTTTTTTCATGGACCCTAGAATTTACTTCTGATCCAATTCC
TGTTATCCGAAGAAAATTCAGAGTCAAGTGGTGGGATAAATACAAAATTCCCTCAAACCT
TTACCCGTCAAATATTCTTACCTGGATAAAAGAACAAAACTCAAAAATCCAAACACTTAA
CCAAACACAGAACCAAACACCAGAGACAACCTTTTTCTTGGCTCAAAAATCCAAAATGTT
AGCAATGTTGGCAGGTGCAAAATCTGAAGAAGAAATTAAGGCTATCTCCTTACAATTTCT
ACCGTCAATGTCAGATCAAATCTCTCGTACTTCAGGGAGTGATTCAGGGTCCCAAGTGCC
AGATATCGATGAAGAAATTTTTGGCAACAGTGGAGTTTAAATCTCTCTCCCCAAGAAATG
CAAATCTCCTCAAAATCCAAAACGTATCTTTGTTGCAACTCTGTCAGATACGGTTACATT
GTTACGAATATTTTCCACGATCTCTTGTCGCAATACCCGATAAAAATCCAAAACATCAAA
TAAGTGCTATCTCCTGTAGCCATGAAGACCAAGGTCCACTTCCAGCAGACAGCAAACAAT
TATGGAGCTTAATGGAGCAAGCTTTTGCTAGTGGAGTTATCCATATATGCCACTTTTATT
TTTATTTTTATTTTTATTTTCATAATTTCACCCTTGTAAACTCCTATATAAAGGAGTCTT
TGCTTCAGTTGTAAACCAAGTTCTCATTCTCTCATTCTCCTACTCTTTCATTCATATCCT
CTCTTACATTCTCTCCAGTCCTTGTAATCGAGAACATTGCTACAATCTCTTTTTAAGTAA
GTTTTTAATAAATAAAGTTTCAATTATATTTTTCTTGTTTCATTTTCTCGTTTTAGTATT
ATGCTTTATGTTTAAGTGGCTGGTCTAACCGCCCATATTTCTGTTTTATTTTTAAGTTAT
ATTTCAATCTGTTTCATATATGTCTTAATTTACTTTTTATTATAAATGTTTAATTATGCT
TTCTCCAAGACCGTTGTCTGA
>CrubV [endogenous-virus-name=Capsella rubella virus] [strain=sequence cluster 1] [host= Capsella bursa-pastoris] [moltype=genomic DNA] [note=incomplete at 5’ and 3’ ends, mutations in ORFs 1 and 2] 6232 bp
CATAGGTGTTCCACGCTGTAAGTCCCGAAGGCAGTGAGTCCGTTGGTAAGCCCGTGCATC
ACCCGTCGTCGATAAGATCGGTTAGTTTGCATTTTAGCATGAGTTTAAGAATATTTTAAA
CATGGCATCTACGGTTAGAAAGTTGTTTAAGTCTAAACATGCATCATCCTCTACATCTCA
AAAAACAATTAATTCAAGAGAAATCATGTCAAAAATTACAACTTTTAATCAAGAAATATC
AAATGACCAACTACCACATATTAGTCCAGAAAATATATATCAAATAGGAACTTTTGATTT
TAAAACAGCGTATTCAATAAAAGAACATGAACAAACTTTATCTTTACAAAATGAATTTGA
AGAAATTAAGTTACTTTCTTCTATGGCTTTAGAAAACTATAAAAGAAAGAAATTTAATTA
TATTCATTTCGGTCTAATACAAATAGCAATAAAACCTTTACCCAGAACAGGGATAGATTC
TCCAATACTTATGTTATTAAGAGATAAAACTCTTTTAAAGTTTAAGGACTCCTTGTTAGG
AGCTGTACAATCAAACTTATGTAACGGAGCTATATACTTTAATTGTGCTCCAAACTTTCA
AGTAAGTTTACATGACCCAACAATATTCAATACTTTAGTTTTAAACGTACACTTGCCTGA
AATTAAATTTCAGCAAGAAAGACACGGTTATTTATTGTTGTATCGAATTTAGTTTAAGCA
ATCTACATCTGAGTTTAATCCTCGATGTTTGTTGCAAGATGATAAAGGCGAAACAACAAT
ATTAGCTGTACATAGTAAAGATACTCCAACCTCTACATATACACCCAAACAATTAAAATG
GACAGAAATAACAATCCCTGATCAATGGAAAATTAATATTACTCAACCACCACGAAACTT
TGAACAAAGAACTCTTACAAGTATAACAGAACAATACGATGGAAAAGTATTATTAAAATT
TGGTTCTTTCAGAGATTCACCATCATTAAAAATAAGCTCTTTTTACCCACGTTCATCTTT
CTCTGACTATAGAACTCGCCAAGATAGTACTGAATCCGAAGAAAGTATAGAACAAATTTT
AACAAAAAACCAAGAGAAAAAACCTATTAACTTTCAAGCACCAATAGCTGAACCAATTCA
ACCATCAGAGGCAGGATCGTCTAACTTTCCTACTTCTCCAACTCCTTCAGATTTTAAATC
AATAAATGTTATTTCGAAAGTATTTACGATAGATAAGCACTATCTTAAAGAAGAATTTTT
ATCACATCAAAATAGAGATAAAAGAAAATGGTACTTTGAAACTTTTACTAAAGAAAAACT
TACAAGTTTTAGAGAAATATGGTATAGTTACATGGAAATTATAGAAATAAATATTCCATT
TTTTACATGGTTTGAAACCTACGCTTTAGAAAACAAAATAGACTACCCATATAAAGATAA
ATCAATAAACACTAGTTCAACCTTATCTCATACGTGGTAAATGACTAATGGGGAAACACA
TAAATCAGTCCATCCACCGTTAAAGGATATAAAAATTCACACTCCTCAAAGACAAGTAAT
AGCTACACCTTTTAGAACCGGAGCAAATAGAGATGATAGAGATTCAATAAATATGGCTGA
CATTAAAATAGTATATGAACAAAATAATTACCAAAGTCAAATACTACATACTATCTCACG
GCAAATTGATCATATAGATAACAAATTAGATAAAGACGAAAATGTTTTATTAACAAACTA
TCAACCATTGTTACCACCTTTTAACACAATATCACCACCCCTCTTTAAACCATTAACTAA
ACCCATCAAATTCCCAGAAAATGAAATTTTAAAATCAATTTCAAGTAGACTAGATAGACT
AGACAAAGGTAAGGGTATAAACAATATTGATGAAAACATTCAGTCTGAAACAGATATAGA
AATAAATCGAATAAAAAGAAACTTCCAGCAATCCAAAAAACCATATTATCCAAGACACTC
TCCACCCGACCTATTATTTGAAGAGCATAATAAATTTCCCTCCACAAACTTTTATAACGG
GGAAGGGATATATGAATGGAACATAGATGGAAGGTCCGAATATGAAATGATGAACTTATT
TCAAGAAATGGGAATGGCTACGTTAGCTTATAAATCTAAAGGAATGTCAGATAAACAAGC
ATGTCTACTCTTAATCTCAGGGTTTAATGGTGCCTTAAAATTTTGGTGGGATAATGCCTT
AGATATAACATCACAAGATTCTATTATAAACCACACTGAAACTAAAAGAGTAGAAGGGGA
TGATGGTTTTTATGAAGAAGAACAAGTTCAAAACGCTGTAGAAGTATTACTTCATACCAT
CACCATGCATTTCGTAGGAAATCCTTCTGAAGAACTTACAAGTAAAAAACTTATTTTAAC
AAACCTTCGATGTCCAACACTAGGAGACTTTAAATGGTATAAAGACATATTTATAACAAA
CATATTTCAAAGAAACGACTGCAACCAACCCTTCTGGAAAGAAAGGTTCATTGCAGGATT
ACCTTCGTTCTTCGCAGAACGATTAATTAGTAAACTAAAAGATTTTTCTGGCGGACAACC
GGTACCTTGGGATACGATAACCTATGGTCAGTTGTTTGCTTTTGTTAAAAAAGAAGGATT
ACAAATATGTCAAGAACATAAAGATAAACAAAAAACTAATAAATTTAAATTCGGTGAAAC
TATGGGCTCATTTTGCGAGCAATATGGTTATCATCGTCTCACTCCACCATCTAGAGAAAG
ACAAAAAACACGTAAACAAAATAAATCATTTTACCCACAACCTTACAATAAAAGGAAAAG
ATTTTCAAAAAGATTTTCTAACTCGTACTATACAAAAAATAAAAATCCAAAACAACCAAA
TAAAAAAGAAAAAATTATATGTTGGAACTGTAAACGACCAGGACATAAATCTACTGATTG
CAAAATGAAAAGAAAAATTACTGAAATATTCCACGATCAACAAGACATTAAAGAAAAATT
AGAAAAGTTACTTCTTTCGGAAACAGAAAATTCAGAAGAACTTAGTAGCGATCCTTCTCT
AGACATAATAGAAAGTGAAAGCGATACATCAACTTAAAACTCTGGGAATTACTCAGATGA
TATATGCAACTGTAAAACAATAAATGTAATAACTAAAGACATCGATAAACAATTTTTAAT
AGATATTATAGACAAAATAGATGATCAAGAGACTAAAAAGGAGTATTTATTAAAATTAAA
AGATTTAGTGCAAAGGGAAAATCAGTTGCTAACCCCACAACCATTTAGTCTTAATAGAAT
AATAGAAAAGTATCCTTCCCCAACACTATTTAAACAAGTAACTACCGGTGAATTACAAGG
AGAAGTAAAAAATTTAAAAGCACAAATAAAAGAATTATAACAAATAGTTCACCAACATCA
ACTTCACCAACTACAAGTAGACGCTAGACTAGCTCTTATAGAACCCAAAATCCGCCAACC
TCAACCCATAACAACGGATGAACCCTCCACAAGCAACCCTGATAAACATGAGAAAACAGA
AGAAGAAGAATATATCCAAATAATAAATAAAATAAACTATCAAAAATGGTATACGAAAAT
AACATTACATTGGGTATGATTTTAAACTAGAAACCATAGCACTTTTAGATACAGGAGCTG
ATTATAACTGTATTAGAGAAGGAATAATTCCTACAAAATTCTACAAGAAAACATACGAAA
AACTTAGTGGTGCAAACGGAAGCAGTTTAAAGGTCAATTATAAATTACCTAAAGCAAAAA
TTTGTAATAAAAACTATTGCTTTAAAACACAATTTATCCTTGTAAAAAATTTAAGTCAAG
AAGTTATACTAGGAACTCCATTTTTTACACAAATTTATCCATTTAAAGTTACAGAGCGAG
GAATTACTACAAAAATTGTAGGAGAAAAGATAATATTTGAATTTCTATCACCTATGAAAA
CAAAAGAAATTTTAGCTTTACAGAATTCCACAATAGAAAAATCTATAAACTTAATAGATA
GAAAACAGAAACATATTCTATACTTACAACAAGAAATAAAATACCAACAAATAGAACAAC
AATTACATGATCCACAAATAATAAATAAAATAAAAAAATTAGAAACTGAACTTTTAGCCC
AAGTATGCTCTGAACTTCCAAATGCATTCTGGGAAAGGAAAAAACATATTGTTGAAATAC
CCTACGAAAAAGACTTCAACGAAAAGCATATTCCAACCAAAGCTAGGCCCATTCAAATGA
ACCAAGAACTATTAGAACATTGCAAAAAAGAAATACAAGAATTGCTTGATAAAAATTTAA
TAAGAAAATCTAAATCTCCTTGGAGTTGTTCAGCATTCTATGTGAACAACCAAGCTGAAA
AAGAAAGAGGAGTACCTCGCTTAGTAATCAATTATAAACCCTTAAACAATGTAATACAAT
GGATAAGATACCCAATACCCAATAAAAGAGATCTACTAAAAAGATTATATGAGGCCTGTA
TATTTTCAAAATTCGATATGAAAAGTGGATTTTGGCAAATACAAATTGCCGAAAAGGATA
AATACAAGACAGCATTCACAGTGCCTTTTGGGCATTACGAATGGAACGTCATGCCTTTTG
GCTTAAAAAATGCACCTTCAGAATTCCAAAACATTATGAATGAAATTTTTAACCCTTACA
CAACTTTTTCTATCGTATATATAGATGATGTTTTAATATTTTCCAAATCTATTGACCAAC
ACTTTAAACACTTATACACCTTTTTAAACATTGTTAAAAAGCATGGACTAGTAGTATCAG
CCAAAAAAATGCAAATATTTCAAACAAAAATACGATTTTTAGGCCATAATATTTATCAAG
GAACTATAACACCAATATCTAGATCAATAGAATTTGTAAGCAAATTTCCAGATGAAATCA
AAGAGAAAACCCAATTACAAAGATTTTTAGGGTGTTTAAACTATATATCAGATTTTCTAC
CAAACCTTAGAAAAACAATTCAACCACTATTTCAAAGATTGCAAAAAAATCCCATACCAT
GGTCTAGTCTGCATACTAGTCTAGTTCGTGACATTAAGAAGAAAGTTACAACACTACCAT
GTCTAGTCATCCCACACCCTAATGCATTCATGATAGTTGAGACAGATGCATCAGAAATAG
GTTACGGGGGGATCCTTAAACAAAACTGCCAGAGTCTACCCAAGAGTCTATAGTCCGTTT
TCATTCAGGGGTTTGGCTTGGACCCCAAAAGAATTATTCTACTGTTAAAAAAGAAGTTTC
ATCTATAGTAAACTGTATTTCTAAATTTCAAGATGATTTAATAAACAAAAAGTTCTTACT
ACGTGTCGACTGTAAGTCAGCTAAAGAGATTTTACAAAAAGATGTTAAAAATTTAGTTTC
TAAACAAATATTTGCTAGATGGCAAGCTATTTTATCCGTATTCGACTTCGATATACAATA
TATAAAAGGAGAAAATAATTCATTACCTGATTTTCTAACAAGAGAGTGTTTACAGGGAAA
ATCTCAGGACTATCAAAATGAGTGAAACACAAAAGAAGCCAATGTGTGCATCAGACTATG
TCAACAATCAACCGCACCTACAAGGAAAGCAAATAACTACTGGTAACCAATTCTCTGCTT
TAGCAGAATTCCCTCCTTTATCTTATGCAAAAGCTGTCAACCCCCAACCACAAAAAATAT
CAACACCATCCTCCTCTCAAAAAACCTCAGACCAAAAACCATCATACTTCCTAAAACCAC
AACGCCAACATCTTATTACAACCTCATTTACTAAACCAATATCTCTCAAAGACCTTACCC
AATATACCAACTGTATTTTTTACGAGGATAGTCAATACCTTACCGACAACCTTACCAAAA
ACCATACATTCTACGAATTCATTCTCGTAGATACAAAGTCAGTTGAAATAACCCACCATA
CCGACAAAAATAACCCAAACCTCATCTCCTACTCCACTTGCAAAATACTCAAAATATGCA
ACCCCCAAGATCTCGGCTTTATTAACCTCCACACATCAAAAGATTTCTCTATACCAGGTT
ACCATATACCAAGATTTACCTACATAGATTACCAAAAAGCCTTTCTCCATACCTTTTACC
TACGAACCTATGATCACTCCTGGTTCCTCTCCTTTGACTTCCATTGCCCCAAGACAATAC
CAGGATGGTTCTATGAATGGTGATACTGGTTCGGCCCCTCCGATGACATATA
>CclemV_scCc1 [endogenous-virus-name=Citrus clementina virus] [strain=sequence cluster Cc1] [host=Citrus clementina] [moltype=genomic DNA] [note=complete genome, mutations in ORF2] 7597 bp
TGGTATCAGAGCCAAGGGGAGGAAAGTGTTTTATTGTTTAGAGTTTCGTGTTTAAAGATC
TTGTGTTTTATTTTGAAGTTTTGTTTTGTGGTGAATTTTTACTGGTTGTAAGTCCCGTTT
TAGGATAAGGATTCCGCTGAGGGCTGTAAATCCATACCTGTAGCCATATTGACCAAACCA
AAAATAGACCATAAGGTCTTGACCATGGATCCTCCAATCTGTAGAACATCGTCCTTTTCT
AGCTCTTCTTCCGGGAAGACTAGTGAGTCAAAGCATGTTGTGAGTTCAGAAGAATTCATT
ATTGAGAACTTTGATAAAGCAATTGATTGTTGGGAACTTCCAAAAATTTCCAAAGAAAAG
ATTTACAAAACAAAAATGCTTGATCTTTTAAAGCATGATTATATTATAAAAACTGAAGAA
CGTGATATAACTCTTTCAGAGCCTTTTGAAACAATTTATTTGTTTTCAGAAAAATCTTTA
AAGAAATTAAAAGAAAAGAATTTTAAATATATTCACATTGGTTTAATCCAAGTAGGAATA
AAACCTTTGACCAAAGAAGGCCTGGATACTTCTATCCTTGCTGTCCTTAGAGATGGGCGA
TTCATCTCTTTTGATGATTCTTTACTAAGTAGTATCGAATCTAGTCTATGTAAAGGTCCC
ATATCTTTTGATTGTTATCCAAATATAACAATTTCTCTTAAAGACAAAAATATTTTAAAA
AGCATGATTTTACAAATCAAAACCCATAATTATCATATGATTAAGGGATCCATCCCAGTT
GCATTAATTTTTAAAATTTCTTACAAAGCCATGATTTCTGCATTTAGCACACAGCATAAA
TACCAGTCAAAAAGAGATGAGACCCTTCTCTTGCAGACTGATTTGTCCAAAGCAAACACA
GTCATTCCTAAACCAATCCAATGGAAAGATGTCAACCTTCCAGAGGAATGGATCCTTGAA
GGAGCCGCTCCACCAGCGATTCCGAAACAACTTGAGCCCAATACAGAGTTGCAAAATGTG
ACTCAGTATTCCGATGGTAAAGTCAAACTATCATTCAGGAGATCTAACTCATCCAGATTT
TCTGATAAAGCGTCGTGCTCAAGCATTCCTTCATTAGAAAGGAAATTTACAAAAATACCC
TCTGTTATAAATCTCCCTTTTCAGCCAATAAAAAGTCAACCTAGGTTTTCTACTTCAGAT
ATACCTAGTACCTCCATTCGATCAGTTGATTACACCACTAGTGTTCCTCATCCGATCTAC
ACTAGTAATCAACATGTACAAAGTCAGGAAGAGAAGGAACCTTCTCCTCCAACTTCCCCT
ACGTTTTCTGCTGTTACAGAAAATGTTATTAATGTCATTGAAAAAGAATTTGAATTAGAT
AAAACTTCTCTGCATAATGATTTTTATTCTGATTTAAACAAAGAAAAAAGACTTTGGTTT
TTCAAACATTTTTTAAACCAAAGAAAAGAAATCCAACAAACTTATTATGAATTTGTGAAT
TTTCATAAAGTTCATATATTGTTTTTTGATTGGTTCGAAATATATTCTTCTGATAACAAC
ATCTCTTATCCTTTTAAAGAGTCAAACCCTATTACTATTAGGAAGAAAGTTCCTGAATGG
AAACTTCTTGATAGTGATAGAACTATAGAATCTGAACACCCACCTCTTCGGAGTGTAACC
GTTGATCACGGTGAACCTCCTGTCCAAATTCGAGCTTCACCTTACAAAATTCCAAAACCA
AATGATTCTGAGGCAAATTTAAGTAGTATTATCCAACAGAATAATTTCTGTAATACTAAC
TTAAATACAATCGGAAAGCAGTTGACTAGGATAGAAAACCAAATCCAGAAGTCAACTATT
ACTGTTCCATCAATTTCTCCTATTCCAACAAAATCGGATTCTGACAAAAAGCTTAAGGAA
CCTATTTTCAAACCCTTTCAGGTTTCGAAAACTAGCCAAAAGCTTGTTCAAGAGTCAAAA
TCAGATTTTGCTAAAGCCATTAGAGAACAATTAGATAGGATAGAAGCTGCTTCTTCCTCA
TCTAGCAAAGTTCAGATAGCCCCTGATACTCCTCAATCTAGCAAGATTGGAGTATTAGAA
CATGACCAAATGTCTATAGCCTCTTCTGATATAGAAGCCTTCAAAGAAGAACCCACTCCT
AAAGCCAACAAAATTCATTGGGAATTAGCCCTTCCCACTGTCAAGACTCCACCGGATCTA
GCAATAGATAATAGACCAAGTGCATTAAATCAATCCCGATATAATGCATCTTCAGTCTAT
GAGTGGAATATTGACGGCATGTCCGAATACAATATCCTAGGATTGTTGCAACAAATGACA
ATGGCAGCCAATGCCTATAAAACCCAAGCAGGAACTTCTGATCGTGCTATATCAGAAATC
CTCATTGCCGGTTTTACTGGTCAATTAAAAGGTTGGTGGGATCATCTTCTCACTAATCAG
CAACAATTAGACATTCTAAATTCCATTCAAGTCGATGAAAATGGAGTCCCTATTTTTGAT
GAGTTCAACAATCCAATTCAGGATGCTGTTGCTACTCTAATTTTAACCATTTCCCTCCAT
TTCATTGGTGACCCTTCACACCTTCGTGATAAAAACGCTGAGTTACTACATAATTTAAGA
TGTAGGAAACTTAGTGAATTTCAAAGTTACAAAACCTCTTTTTTTACCAGACTATTTCTA
AGGGATGATGCAAATCATATAACTTGGAAAGAAAAATTTCTCGCTGGATTACCTACTCTT
CTAGGTGAAAAGGTAAGAAATTCCATCAAAGCCCTTTATGATAACCGTATTCCTTATGAC
GAGCTCACCTATGGTGAACTCGTCAGTTTTGTCAATAAAGAAGGATTAAAGATTTGTCAA
GATTTGAAATTACAGAAACGACTTAAGTGGGAGCTTAAGAAGTCTAAACAAGAATTAGGC
AGTTTCTGTAAACAATTCAATTATGACCCCTTTAAAACTTCTAACTCCAAAGATTGTAAT
GGCGAGTGTTCTACTAAACCCCGCAGGAAACATTACAAATCAAAAAATTTTAGGAAACCC
TTTCGTAATTTTAGAGAACTTCCTTATAAGAAACCTTCGAGGCCTTATAAGAAACCCAAA
TTCTCTAAAAGAAAAGAGTTTAGAGCCAAACCAAAGACCCCTTTCAATTACAAAGAAGCT
ATATGTCATAAATGTGGCATGAAAGGTCATACTGCAAATTATTGCAGAATGAACAAAAAG
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