Tggtatcaaagccaaccctgttttagaaatctaaaagttaatactagttcttctatctta agaaacttaataaattaatccattaaagaaagttggtccgagaattgaggttagagacgc tcaggacacccagtcagttgaccgtttaggccaggagagccgctgaggtctagaagacgt
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|  Yüklə 0.74 Mb.
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GTAATTTCTGCTCGAAAAATGAAACTTTTTCAAACCAACATACAATTTTTAGGATATAAG ATACAACATGATCAAGTTCTTCCAGTCACCCGGGTAATAGAATTTGCAGATAAGTTCCCT GATGAAATTAAAGAAAAGAAACAATTGCAAAGATTTTTAGGATGTTTGAATTATGTTTCA GATTTTTATGAAAGATTAGCAAAAGATAGAAAGATTCTAACCGAAAGGTTAAAGAAAAAT CCTCCTGCCTGGACCACAAGACATACTCAGGCAGTAAAGCAGATCAAGGATAAGGTCAAA AGACTGCCATGCTTATATATTTTAGATCATGATGCATTGAAAATTATTGAGACAGATGCC TCAGATTTTGGTTATGGAGGAATCCTAAAACAAAGGAAGGATTCCAAAGAACAGCTCATT AGGTTCGCTTCAGGAACCTGGAACGATGCTCAAAGAAATTATTCTACCATCAAAAAAGAG ATATTGGCAATCGTAAAGATTGTCTCAAAATTTCAAGGAGAACTTCTCAATCAGAAATTC TTATTGAGAATAGATTGCAAAGCTGCAAAAGATGTTCTCCAAAAAGATGTGGAGAATTTA GTCTCCAAACAGATATTTGCCAGATGGCAAGCAATATTATCATGCTTTGACTTTGATATT GAGCATATAAAGGGAGAAGTGAATTCACTCCCAGATTTCTTATCTCGTGAATTCCTACAG GGATATGGCACTCAAAAGAGAATTATCATTCAAAGGGAGAAGTGATGAAAGCTCTCCATC CAAACAAACTTATCAGGGGAAAATAAGTAAAAGCCCCATGACGCCAGAAAAATATGGAAA TGCGTCTCAATACATTCAGAATTCAGAGGAAATAATATTACCTCTAGAATTCAATGACTC AGATCTCGACCTTCAAAACATATTGGGGAAGTATTTCCCAAAAGATTCTTATTTTATACC TGAGTATCCAGGCAAAGATCAAAATTATTATGAAACAATACTGTGCGAAACACAAAGCGC ACAAATATTCCATAATAAAAATGGAGGAGAATTGGGATTTACAAAATTATTAATCCAGAA AGTTATTCATCTGGAAGAATGGGACAGAAGTTCCAATCCTTATGTGGCCAAAACTATATA CTCGGCCACATGCCTCAATAAGAAATACAACTATTGGGATTATCAAAAGGCTTGGGAAAG AGTGCTGCTCGTACAAAATTATCAAATGAAGCATTCATGGTTCATCCGCTTCAAAGAAGG ATGTGGTGAAATACCACTATGGTTCTTTAACAATTGCTGGCCTAAGGTTGGAGCAATCCC AGAGATACTCCCTGAAGACATTATCAGAATGATCACACAAGAGTCCGAGAAAAACTTAAA GGACTATCCCTTTATACTTATGCAGTTCTGTGTGGAAACATCCCAACCATGGATCATCAA GTGGGAGTTTGATATTCAAAAGACCCAATTCCCAGCAACTCTCAGAAGAAGATATTATGC AAGATGGTGGGATAAATTCAATATTCAGGCCATCATTAATAAAAGAAGATATGAAGCCTC AAGCAAAAAATCCAACATGGCCAAGCTAAAGGAAGACATCACCAAAGAGTTGTTACTAAA ACAACCAAATTTATCCCAAGCTGATCTCAAACTGCTTGTTTATGAAAAAATGTTCAAAAT GTTAGATGATACTCCTCATCCACTTCAGATCAAATCTCCTAAGCCAGAAGATGAAGAAGA TCAAGTACAATGCAGCCAAGCGGCACCAGGTTTCGTATATTATTCGCCAATGAAGCAAGA AGAAGAAGGATCCCAGGGAGGAATATCTGATTACTCCTCAATGAGCAAATAAAATCACAA TCAAAATGAAGAAGACTAGATGTCCTTCAAGGACAAAGGAATCTACATTATTGAAGATAA GACCAAACAGTCTAAAGGCTCATCATGAAGACCTTTTCAAAGTCAAAAGTATCATCATAA TGCCCATAGATAGTCAAAAAGAGATATCATGAAGATGCTCCACTACTTTTGTGAAGTCAA AAAGATCATCATGAAGATTCCCCAATAATGTATGACAAGGGTCAAAAAGACCATCATGAA GATGCACCAATAATGCAAGAAAAAAGTCAAAAGAGTCATCATGAAGATGCACCTCCACCA ATAACCATATCCTGGCCACCCCTATATAAGAAGAGGAAGAGGCAAGAGGAGGAGCACGCA GAAAACTTCAGACGCAAAACTTCAGACGCAGACTACTCCACACACACCCAAGCTCAAGCC CTCAAGCTCGAGCACCAACCACCTAAGTATTGTAGTAGTGTCATGTACTCTAAATAAGAG GCTCAGTGTGAGAGTCTAATGAGAGTCGTCTTGTAAACAAGTCCCTGTACTTTGTTCGTG TGTATCAAGAGCCTGGTGTACTACTCGAAGGCATTTACCTTCGACTATCAAGGTACCTAA TATAATCCAGGACTATGTTTGTATAATTATGTTCATGTTCTACTTTCTTTATATTTCGTT CTATGTTATATTATGCTAGTTGTGTGTTTCTTTATTAATTAAAAATCCAAAAATATTTAT AGTTTTTATTTTCATATTAATTACTTTTATGTTCATTCTATCTTCCGCACTGCATCCGTT ATTACTTTCATATTAATTACTTTATGTTCATTCTATCTTCCGCACTGCATCCGATTTTGC TTTCCTGCATATAAAACCTATAAAAACCCATAAAAACTCCACCTTCACGGACATACCATC CTAATCCCACCTAGACCTGGACTCGATCCTTTCAAGC
TGGTATCGGAGCCACTAGGTTCGCCCGAGCTCCCCAAGCCATCTTCTCCGAACGGGGGGG AGAGGGTGCGGTAGTAGGCCGAAGTCGCGGAGATCCCGTAGTGTGTTGGTACGCCGAAGT CGCGGAGATCCTGTTTCCTCTTGTAAGAGTTCGCCTCGACCCGTTAGTCTAAGCTTGCCT CGACCCGTTAGTCTAAGCTTGCCTCGACCCGTTAGCCTTGTTTAGCCGAAGGATAGGCGT TTGTTGGCGTTGAAACGTTGGACTAGCAGCTTAGGCGGTGAAACGTTGGACTAGCAGCTT AGGCGGTGAAACGTTGGACTAGCAGCTCGAACAGAGAAACAAGTCGATCTTAATTGTGAG GTTTAACCCTGCCGTTGGACTGGAAACCATATACCCTACAAGGTGATCTTAATTGTGAGG TTTATCCCTGCCGTTGGACTGGAAACTACCCCATCTAAACTCCTTTGTCTTCGTATAAGA TGTCTTGGTTAGTAAGGACGCTTAGTGCTTCTGACAGGTCTGAAGCCTCGTGTAGCAGTG ATAGGTCGGTTAAGACTATGTCTGTGAAAAATGCATCATCTATTTGTTTTGAAGATATAG AAAAAAGCATTGCAAATTGGAAAATCCCAAAAATAAATATTAGAGAAATCTATCATGTAG GAACCTTCTCTCTTCGTTCAGACTACTTTATTAAAACCATTGAAAAAACATGTCGTATTA ATACCATGCATGAGACCTTGCACCTCCTTTCTGAAAGAGAAATAAATGACATTAGAGCTA AACCCCAATATCATTATCTGCACTTTGGTTTGGTCCAAGTAGCTATCAGATCCTTGACCA GAAAAGGTTTAAATGTATCCATCTTGGCCTGTCTAAGAGACTGTAGAAACAAAAGATTTC AGGATTCTTTACTTGGGATGGTTGAAGCTAGCCTCAGTAATGGTCCAGTTTTCTTCAACA CCTTTCCAGATTTCTCAGTATCTCTTTCTGATCCAAATATCAACAAAGCTCTCACCCTAA ATTTGCAAACATCAGGCTTTGACCTTGAACCAGGGAGTGAGAACATTTCTGTAACCTACA GAATCTATTACAAAGCCATGACCTCCTTAGCTCCATGTGCAAAACAATATACACCCAAAG GCCTTAGTACCTTGCTACAGGCTAATCCCAGAAACAATATTATCACTCCAAAAGCCTTAA AATGGGAAGAAATAAGGCTGCCCGAAAAATGGACCTTGACTCAAGCTGTTGAGCCACAAA CCCTTGAGCAAACAGAAATCCAATCTATCTCTGAAACTCCTGATGGGGATGTTGAAGTCG CTTTCTCCTCCAAAAGAAAAGCCTTTGTCCAATCTAGGCCCTCTGTTAGCATTGACAATA GACCCCAAATGAAACCACAGAATATTGTCTATGCTACCTATGAAGATAACTCCTATGAAC CATCAATCTCTGATTTTGAAATCAATGTCATTGAGACTGATGATCCCGAACTACAAACAT ATTGTTATATAGTAAGGGAAAAGGAGTTCCAAATAGATAAAGAGCTTCTCCGCAGAGAAA TAGCGCTTCCCAAAAATAAAGCCAAAAAGGAAAGGTATTTCAAGAATGTGGATCAGCCTT TTAGGCTGAAAATTAGAGAAGTTTGGCACAAAGAGATGATTGAGCAAAAGAAGAACATAT TCTTCTTTGATTGGTATGAAAATAGTCAGATCAGACATTTTGAAGAATTCTTTAAACCAG GTTCGAAGCAAAAGGATAAGATAGAACCTGAGTCTGATAATGAGAAGATAACCATGATAA AAAAGGTTTCTAAAGATTGGAAGACCACCAGTGGTAAACAGGTAGAAGCTGTGCATCCAC CTTTTGAACCCATCCAATTGGAAGCAAAAGGTGAAAGCATTAAGGCCTGTCCACTCAAAA ACATATCCAGAGCTACCTATGCTGAACCTATAAAAGTTGAACACATAGGTCACTTGGTAG AACAACAAAATTATTCAAATATATCTTTGCATGCTCTTGGCCAGCAGACAGAGCGGATAG AAGCCATTCTTACGGATGGAACAAAGCCTAACAAAAGTGAAGTTAAGGTAAATCTTCCTT CCAGCTCTCATTCTGAGGTTCCCCAGACACAAATAGTCATTCCACCTTTTGTTCCACAAA TGGCCTCTTCCAACTTCAAGCTTGGAAAACAAAAGGCTATGGGATCCTCTGTTTCTGAGG AATTGATCAATGAATTATCCAACAAACTTGGAAATCTAAAGGTCAACAAAAATATTAACC AGATCACTGATGGTGAAAGTAAAGATGTGATCAACAAAATTAAAACGTTTAAAACAACAA CCCAAACGGCTATGACAAGAAATTATTATCCAAGACCAACCTATGCGGATCTTCAGTTTG AAGAATTGCCGCACATAGCCAACATGACTTGCTTCAATGGCAAGGAAATAGTTGAGTGGA ACCTTGATGGGTTTGTTGAATACCAAATTTTTACCATGTGCCATCAAATGGTTATGTATG CAAATGCTTGCATAGCAAATGGAAATAAAGAGAAGGAAGCAGCCCATATGATTGTCATTG GATTTTCTGGACAATTAAGGGGTTGGTGGGATCACTACCTTAGTGAAACCCAAAGAAAAT CGATTATTGAGGCCGTTAAAATAGATGAAAATGGTAGGCCAATTGTCCTAACCAATGATC AAGGACAATCTCTAGGATCTGTTTCTGATGCCATCTCAACCCTGCTCTACAACATAGTCT ACCACTTTGCTGGTAATTACCAGGATATTTATGAAAAGAATAGGGAGCAATTGATTAGTT TGAGATGCAAAACCATGACAGATTTTAGGTGGTACAAAGACTCCTTTTTATCAAAATTAT ATACTCTTCCAGATCCTAATCAAGATTTTTGGAAAGAAAAATATATATCTGGCTTACCTC CTCTATTTGCTGAAAAGGTTAGAAACTCTTTGAGAAAAGAAGGAGAAGGTAGCATAAATT ATCAAAACCTAGATATAGGAAAGATAACTCAAAAAATACAGTTGGTAGGAGCTGAACTTT GCAATGATTTAAAAATTAAAGAACAGCTCAAGAAGCAAAGGGCTATTGGGAAAAAGGAAT TGGGAGAATTTTGCTACCAATTCGGTTTCCAAGATCCTTTTGAATCCCAAAGAAGAAGGT CACATAGAGATCATAAAAGAAATTATGATGACAATAAGAAAGCAAAACACCCTATGAGAA GAAGGCATAAGAAGAAATATGACACAGGAAATGTCTTCAAAAATTTTAAAAAGGAACACA AGGCAAATGATTTAGTTTGCTTCAACTGTGGCCAAAAGGGTCATAAATCTTCAAACTGTT TCAAATCAAAAGTAAAACAAGAAATTCAAGCCTTGCTTGAATCAGATTCTGAGGATATCA AAGGAAGATTGGGAGAAATCTTAAATCATATACAAAGTGATGACAGCTCAGAAGATAACA CTGAGATAAATTGTTGTGAAAATAATGAATGTTCATGTTATGAACAGGGTACCTCTGAAA ATGAGTCAGATGAAAACGTTTTAGTTCTCACTGACCTAGAACAGTTTGTTTTAGACACCT TTGACACTGTGCAGGACCCAGAAGAAAAGGAGATTATCCTTGAAAAATTCTTATCAAGGG TAAAGAATAACAAAGATAAATTGGTTAATGAAATTCAGAAAAAGAAATATTGTTCTGCAG ATGAGGTCTTCCAAAGGGTTGAAGATCTAAAAAGGAAAAATAAGCAACTAAGTCTTGATG ATCTCTCAAAAGAATATAATTTCATCAAAGAAGAATTAATAGATCTCAAAAGAAGAATTC AGATCTTGGAGCTCCATAAGAAGAATGATCATGGGGAAAAACTTATCGAAAGAGAGCCAC CTGATGATGAATTAATAGGCTCTATAGAAAGATATTTTAAGCAAAAATGGTACACTGAAT TATCATATGAATTCTATGATGGGCATAAATTCACATATAACACCCTGCTAGATTCTGGTG CTGATGTAAATTGCATTCGACAAGATATCATCCCATCCAGGTACTTTATAAAATCCACAC ATAAGATTCACTCCGCTGAAGGTCATCTTCTGAAGGTAAATTACAAAATTCCAGAGGTCA ACATTTGTATTGAAAACATTCGTATTAAAGCATCATTTGTGCTAGTTGAAAATCTAAAAC AAGATGTTATCCTTGGGACACCTTTTCTATCTTCAATTCGCCCCTTTATGGTTACTAATG AGGGCATCCAATTTCATTTAGATGGAACCAAGATAGAAATATCCTTTCTATCAAAACCAG AAAAAATAAGACTCAATCAGATTTCAGAAGAATCTATCAATAGTATATCATCAGATGACT CTACGGGAGTAAGATTTCAAAAGGGTAAGATATTACATGATTCATCCCTAACAAAAAGGA TTCTCTTGATGCAGCAAAAGCTAGAGATGGCTCCTCTCTTGAAGTACAAACATCTCATGC GGATGAGTACTTGGAGGCTGCCGATACTTCCAGATGGAGATCGTGATCGTTTCAATCATA ATTTTGAGATCAATGACTTGCAGCAAGGGTTGTTAAACCTACTCTGGCAAGTTAAAACTA AAAAAGATAAAGCTCATGCTCTAAATGGGCTAGCATATTATTTCAGAAGCATGGGAAAAA TCCCTTGCATACAAGATAACCTTTCTGATCATCAGAAAAGGTCTTCAAAATTATCAGATG ATGACCACCTTGAAGAGGGGTCCTCAAACTTATCAGATTCTCTCCTCATGCCAGGAGAAA GATTTCCAAAATTATATGATCAAAATGATCCCAACTCAAAATTATTAAATCACAAGGTAT GTGATTCTGAGACAAAATCTTCGGAAATATTCCGATCTCCACCAGATGATACTTTCCCTC AAAAAGATAAGATGTCTCATGCTAAGGTCAAAAACACCAAAGATGCTTCCACCCAAACCG AATCAATCCTCGATAACCCCAGTCACCACCAAAATTATACCACCATTGATGAAACCAACC TTGCTCCACTCAAAAGACACAAGCCAGGTTCATTACCTATCAGCACCCCTTATGAGTTGC TTGTCCCAAAGCTAAGCTTCAAAACTGAGCAAGCCCTTTCAATCCTTTCCCAGGATTGTA TTAACCTAATCTGGGAAAAATATCAGCAAAGACACATGAATGTGTTCCATGGTCTCCAAG ATTATTTCCTAGACCTTTATACTGGGAAAGACACGCACAAGGGGATATCCATCAAGATTC ATGCATTCCCCTTCCTTCATCTTGATGATAAATTGATCATCCAGCCACGACACAAATATA TCATTCTCAGAGCAGATATAAACCTGAAATATTTCAGAAGCCTACAGACTTATTCCGCCG AAGATATCTCCTTACAAACTATAATAGATCAAGGGTTGGTCCATGCAGTTTATGGATCAA TGGAAGAAATTCTTCATTCTGATCTGGGAATAGCCATTAAAGAAGCCTGCAAGAAGCTAT ACCATCTCAAAGGAAGATTCAAGATTATGTTTTATTCATCACCACCAAGGTTCACGCCAC CACTAAGGCCTGCAACCCATGATGTCTATATCAACAAGGGATGTTATCATTTTCCCAGTA ATACGTATTATGATCTGGGACAAGAATATGAAGAATTGCTCTCCAAAGATACAAATCATG ACAACTGGAGAATTTTCAATGAAGCCAAAGAACTTGAAGAAAATATCAGATTTGATCCTA CATATCATATGGTTTTCCAAAATAAAATTATGAGGGTTTTTCTGCCAGAACCCCATGGAA GTTTTGGGCCAATTACAAGATGTGTCGGAAGGCTGATAAAACCAGACTATGGTAAAGAAA CACAGCTAAGGAAAGAATACCGTGAATTTATGGCCTGGCAAGACATGTGGCAACCTGATG AAATTGATGGTACAGAAGCAGCACCCATGATAGATTATGATGAAGAAGACTAGATATCCT TCAAGGACAAAGGAATCTACATTATTGAAGATAAGACCAAACATTATCAAGAGTCTAAAG GCTCATCATGAAGGCCTTTTCAAAGTCAAAAGTATCATCATAATGCCCATAGATAGTCAA AAAGAGATATCATGAAGATGCTCCACTACTTTTGTGAAGTCAAAAAGATCATCATGAAGA TTCCCCAATAATGTATGACAAGGGTCAAAAAGACCATCATGAAGATGCACCAATAATGCA AGAAAAGAGTCAAAAGAGTCATCATGAAGATGCACCTCCACCAACAACCATATCCTTGCC ACCCCTATATAAGAAGAGGAAGAGGCAAGAGGAGGGAGCACGCAGAAAACTTCAGACGCA AAACTTCAGACGCAGACTTCCACACACACCCAAGCTCAAGCCCTCAAGCTCGAGCAACAC CATCCACCTAAGTATTGTAGTAGTGTCATGTACTCTAAATAAGAGGCTCAGTGTGAGAGT CTAATGAGAGTCGTCTTGTAAACAAGTCCCTGTACTTTGTTCGTGTGTTCGTGTGTATCA AGAGCCTGGTGTACTACTCGAAGGCATTCACCTTCGACTATCAAGGTACCTAATATAATC CAGGACTATGTTTGTATAATTATGTTCATGTTCTACTTTCTTTATATTTCGTTCTATGTT ATATTGTGTTAGTTGTGTGTTTCTTTATTAATTAAAAATCCAAAAATATTTATAGTTATT ACTTTCATATTAATTACTTTTATGTTCATTCTATCTTCCGCACTGCATCCGATTTTACTT TCCTGCATATAAACTGCAATAAAAACCCATAAAAACTCCACCTTCACAGACATACCATCC TAATCCCACCTAGACCTGGACTCGATCCTTTCAAGC >TcacV_sc1 [endogenous-virus-name=Theobroma cacao virus] [strain=sequence cluster 1] [host=Theobroma cacao accession B97-61/B2] [moltype=genomic DNA] [note=incomplete at 3end, mutations in ORF1 and ORF2] 6390 bp TGGTATCAGAGCCAGGTTTTAATTGGTTAGTTGGTACTATATTAATTGCTACCGAGTCTT TAAAAAATCAATCTATTAAGCCAAAGGGTAGGCTTATTAGATATAATTTTTTCCTATAGG CGGAAGTGATATAGAACCACTGTAACAGTAGAAACCATCTAATGTAAGAAAATAAATTGA AAAACAACATACTTCTTTTTTGAAGAACTACCTCCTGCTCCAGTTCAAACTCTAACCAAA CCTAGAGTGTCAACGAAGAAAATATTCAATATGAAAATATTATCCAAGAAATAGATAATT GAGAAATACCAAAAGTCCCTCAAAACCAAATTTACAAATCTTCAACATTTCATGCTTTAC ATTTAAATTCTTTTTGTGGATATCTAATCAAAACAAAAGAAAAAGGAATACCAATTCAAA ATCAATATGAAAATATCCAACTCTTAGATCAAGATACTATTCAAAAACTTAGAAATCAAA AATATAATTATATCCATTTTGGATTAGTTCAAGTAAGAGCAAAACCTTTTACCAAAGAAG GATTAGATACTTCAATCCTCATAGTATTAAGAGATAAAAAACATCTTCAATTTAATGATT CCCTATTAAGAACAGTAGAAACAAGTCTTTGTAGAGGACCAATACATTTTAATTGTTTTC CAAATTTTATGGTTTCATTAAAAGATAGAAATATTCTAAGCTCATTAACACTCCAAATTC AAACTCATAATTATAAAATGATGCCAGGATCTGAACCATTAACAGTAGTCTTCAAATTAT ATTACAAAGAAATGTATTCTGTAATCAACACTAAAGCTTTAATTCACAGTCCAAAAGGAG AGACTCTCATAATACAAACAGATATGACAAGATCCCATACAGTTATACCTAGAACCATTC AATGGCATGAGGTACAACTCCCAAATAAATGAAAAATAGAAAGAGCCACAAATCTTGTTA CTATTCAAAATACAGAAATAAATCATGTAGCAGAATATAAAGATGGTTCAGTAGAACTCG TCTTCAATAGGCCTCCAAGAGTACCCCCTAGACAGTCTTTTGATACTGAACAAATAATAA GAAGCATAAACATATTAGGAGAAAATCCATCTGTAATAGGAACAGACTTTAAAACAGCTA GAGCTTCTGTATCCTCAATACCTTTAACTATTAGGACAAATCTACAAGGAATAAACAACT CCTCAAACATACCTCAACCTATTTACAACACACAAGAAAACAGTTCAACAAACTCTCCCA ACATGTCACCAACATACTCTTCAATGACAAATAATCCAAATCTAAACACAAATGATGAAC AAAATTCAGAAATATTTGTACTAGAAAAAGAATTTAAAATTGATAAAGAATGGTGTAGAA AACAATTTTATTCAAAGAAAAATAAACAAAAAAGAGAAAATTATTTAAAAAATTATGAAC AACAAAAAGATGAAATCCTAAAAGAATATTACAATTTCATGAATAAATATAAAATCTTAA TAGAATTCTTTGAATGGTTTGAAAATCATTATGATACTCAATCAATAAATACAACAAAAA ATGATAATAAATGGCAAACTAACAAAGGAGAAATAGAATCACAACATCCCCATTTAACAG AAATCCAATATGTACATAAAAAAACAGGAATTAGAGCCACTCCATTAAGAATGAGAGCAC CTGAAACAGGAGAAACTATTTCCTCAAAAGACATAAAAATGATAGTCGAACAAAATAATT ATACAAATTTAAATCTACACACTATATCACAACAATTAGACAAAATAGAAATCTTAGTTG AAAATCAACCTAAAACCTCTCAAATAGAACAAAACAAAATAGAAACTTCAAAAACAACTT CAAAACCAGTATTCACACCATTTGAAGTCCCAAAGAAATATCACCAAGAACAACAAAATC AATTTTTAAAAGAAATACAAGACAGAATTGATGCTTTAGAAAGTCAAAATTCAAGAATAG TTATTCCAGAAACTCCAACACAACAATCTCGCACAATTCATATAATAGAAACTCAAAGCT AAACATCAGAAGAATCTGAGGATCAACAAATCAATAAAATGGTTTGGAAAGAACCACAAA AATATTATTACCCCAAAATAACAGCCCCAGATTTAAATATTGAAGAAAAACCAACATTCC AAAACAAATATAATGCTAATACTATTTATGAATGGAACATAGATGGAATGTCTGAATATA ATATTCTCAGTACACTCCAACAAATGACAATGGTTTCAAATGTTTACAAAACTCAAAACC AAACTGGTCAAATTTCAGATCATGCTATAGCACACCTTTTAGTTGCTGGATTTACAAGAC AATTAAAAGGATGGTGGGATAATTACCTTACAACAAATCAACAACAAGAAATACTAAAAG CTACCAAAAAAGATAATGAAGGAAATATTATTCTAGACAACCAAGGAAAAGAGATACAAG ATGCAGTTGCAACTCTCATCTTCTCAATATCCAAACACTTCATAGGAGATCCCTCTCACT TAAGAGATAAAAATTCAGAATTATTATCAAATTTAAAATGCAAAAAATTAACTGATTTCA AATGGTACAAAGATATGTTTATGACAAGAATAATGCAAAGATCAGACAATAATCAACCTT TCTGGAAAGAAAAATTCTTAGCTGGACTTCCTACATTATTAGGAGAAAAGGTTAGGAATC AAATAAGAGAAACTTATAAAGGAATAATACCCTATGAAAACCTTACATATGGAGAACTCA TAAGTTTTACCCAAAAAGAAAGATTAAAAATATGTCAAGATTTAAAACTTCAAAGACAAT TAAAGAAAGAAAGAAAATTATGTGCAAAAGAATTAGGATCATTTTGCCAACAATTTGATA TCAGAAATGAATCTTCTTCCTCAAAACCTTGTTGCTCTGCAAAACCAACAAAACAAAGAA AACATAAGAAAAACCTCCAAGAATACTATCAAAAACCAAAATACAAGAAATATAGAAAAC AAAAAAAAAAACAAAACAAATATAATAACAGAGATAAAACAATAAAATGTTTTAGATGTG GAAAAACTAGTCATATTTCAAAATACTACAAAATAAAAAAGAAAATTAACCAACTCCAAC TAAGAGAAGAAACTGAACAAAAAATCAATGAAATACTCTTAGAAACATCAACATCTGAAA CTGACACAACAATAAATAGTGAATCTTCAAAAAACTTACAAATAAATGAAATTCATACAA CATCTCAATCCTCAACTGAAACAGAAAATTTAATTCATGTATTAACAAAAGACCAAGAAT TCATGATTGAAATTATTGATAAAATACAAGATCCAATGATAAAAAAAGAATACCTTCAAA AATTAAAAGAATTAATAAAAGAAAAACCTGATAAGCCCAACCTACATGATGAGCCGATAT ATAACATTAAAAACATCATTTTCGATAAATATGAAAAAACAAAACCAAGAAAAATAACAA AAGAAGAATTAAACTCAGAAATAAAAACCATAAAAACAGAAATTTCCAAACTCAAGAAAG AACAACAACAAATTAAACAACAAATCCAACTGTTCAAAAATACAAAAAACCAAAATGATC AAAATTCTTCAGAATCAGAAACAAAACATCAAAATACACAAGAATATATGATGGTTCTTA CTGAAGTATCCATCCAAAGATACTTAATAAAAATAACACTTTTAATTAATGAAGAATTCC AATTAGAAACAATAGCATTATTTGACACAAGAGCATATCAAAATTGTATCCGAGAAGGAT TAATACCAACAAAATATTATGACAAAACAACAGAAGGATTAAAAACAGCAAATGGTGGAA AACTCAAAATCAATTACAAAATAACAAATGCAGAAATATGCAACCAAGGAATTAAAATAA AAACACCTTTCTTAATGGTCAAAGACATGACTCAAGATATTATTTTAGGAATACCTTTTA TCTCATTATTAAAACCCTATAAAGTTACTCACCAAGCAATTACTACCAAAATATTAAAAA CTAAAATAAGTTTTCCTTTTGTAGAAAAACCAAAAATTAGAAATATTAATTTACTAAAAT CTTTATCAATTCATACAAATCAAATTAATTCTTTAATTAATTATAAACAAAATCAAATCA CATATCTAAAAGAAGAAGTTTCTTTTGAAAAAATTAATCAACAATTAACCACTAATGAAG TTAAACAACAAATTGAACAAATTAAAAAAGAAATAGAAGATACAATTTGTTCTGATATTC CAAATGCTTTTTGGGACAGGAAAAAACATCAAGTAGAATTACCTTATACAAAAGATTTTA ATGAAAAACAAATCCCTACAAAAGCAAGAGCAATACAAATGAACAAAGAAATGGAAGAAT TTTGCAAAAAAGAAATTAAAGATTTACTAGATAAAAAATTAATCAGGAAAAGTAATTCAC CATGGAGTTGTTCTGCTTTCTATGTAATTAAAAATGCAGAAATAGAAAGAGGAACACCAA GACTTGTCATCAATTACAAACCATTAAACAAAGCATTGGAATGGATAAGATATCCTATTC CAACAAAGAAAGATCTCCTACAAAAACTATGTAATGCAAAAATTTTCTCAAAATTTGATA TGAAATCAGGATTTTGGCAAATCCAGATCAAAGAAACTGAAAGATACAAAACAGCATTTA CAGTCCCTTTTAGACAATATGAATGGAATGTTATGCCTTTTGGATTAAAAAATGCACCAT CAGAATTTCAAAGAATAATGAATGAAATATTCAATCCATACTCTCAATTCACAATAGTAT ATATTGATGATGTTTTGATATTCTCACAAAACTTACAAAAACATTTTAAACATCTCAGAA TATTCATTAATATCATCAAAAAAAATGGTTTAGTTGTATCTAAATCCAAAACTAGTTTAT TCCAAACAAAAATAAGATTCTTAGGACATTATGTCACACAAGGAACTATAATTCCCATAG AAAGATCAATAAAATTTGCTAACAACTTACCTGACAAAATTATAGAAAAAACCAAACTCC AAAGATTTCTAGGAAACCTCAATTATGTAATAGATTTCTATCCAGAACTAAACAAAATAT GCAAACCTTTGCATGACAAGTTAAAAAAGAATCCAAGTCCATGGACAAACATTCATACTA ACATTGTCAGACAAATAAAAACCCATATCAAAGAACTACCATGCCTACACTTAGCAGACC CAAACCTCCCAAAAATAATAGAAACTAACGCATCAGAAATAAGATATGGAGGAATCCTTA AACAACTAAAAAACCAAAAAGAATACATAGTCCAATATACATCTCGACATTGGACTCCAA CATAACAAAATTACAATACCATTAAAAAAGAAATTTTAGCAATTGTTTTATGCATTTCCA AATTCCAAAGTGATTTACTAAATCAAAAATTCCTTTTAAGAATTGATTGCAAATCTGCAA AAGAAGGTTTACAAAAAGATGTTCAAAATATCGCTTCAAAACAAATTTTTGCAAGATGGC AAGCAATTTTAAGCATATTCGACTTTGATATTGAATATATCAAGGGAGAATCAAATTCTC TACCAGATTTTCTTACAAGAGAATTCTTACAGAGAAAATCATGCCCCCAAAATTGAACTC CCAAAAGAAAAACAAAAAAAATCATCTTAAACCAAAAAATTCAATGGTATCAATTTTGGT TACTAAATAAGCTTTCTAGAAATACCAACCCCCAGTTCTCAAAAAACCCCAGAATTCTCA CCCAAATTTTATTTTACAGGGAGCAATGCCACCAAAATTACGAGACAGGAAAGACAAAGG AAAAGAAAAACAAGAAAAGGTAGAAGATTCTGCCCAAGCCATAACCCAAATACCCATCAA ATCATGGTACGAGATACATACCCAAGAAGAGCAAGAATCACAGAAAGAAGCTACGACTTC TTCACAACCATTACCAATACTCCAAGACTCCCAAGATCCTTATGAGCTAGATTCCCAAAT AAAACAATGGATAGAATCCCTATCCCAATCCCCAGAAATAGCAATAGCCCTAGCCTCCCA AAGAGACCAACCCCTTTGAAATAGATAGCCTTATCAACATTAAAATCCTTAAAAAACAAA GAGATTGTGCTTCATAAACCAAAAAGTCTCCAAACAATTTTCCCAGAGAACCAAACCATA ACCCAAACACAGTCCCAAACATCATCTTCCCAAAAAAGCCAAACCCAATATTTTAGAAAG AAAAATATCCAAAATGTTTTATTAATTGAAGAGGGATTTTACCATGAATACCCCCAAATA GCCATCAAAAAAGCCTTTAAAGGATGGCATTACAAATCATGGGATTTACAAAATCCCTAA CAATATTATCAAAACATTTAAATCCAAACA >TcacV_sc2 [endogenous-virus-name=Theobroma cacao virus] [strain=sequence cluster 2] [host=Theobroma cacao accession B97-61/B2] [moltype=genomic DNA] [note=incomplete at both 5 and 3’ ends, mutations in ORF1 and ORF2] 6068 bp ATGTAAGAAAATAAATTGGAAATACAACATGCTTCACTTTTTAAGAACTACTTCTTGTTT CAGTTCAAACTCTAACCAAACCCAAAGTGTCAATGAGAAAAATATTCATTGTGAAAATAT TATACAAGAAATTAAAAAATTCGGAAATTCCAAGAGTCCCTTAAAATCAAATTTACAAAT CTTCAACATTCCATGCTTTGCATTTAAATTCCTTTTGCGAATATTTAATTAAAATAAAAG AAAAAAGAATACCAATTCAAAATCAATATGAAAATATCCAACTTTTAGATCAAGATACAA TTCAAAAAGTTAAGAATCAAAAATATAATTACATCTGTTTTGGACTAATACAAGTATGAG CTAAACCTCTTACCAAAGAAGGATTAGATACTTCTATCCTCATAGTTCTTAGAGACAAAA GACATATTCATTTCAATGATTCTTTGTTTGGAACAATAAAAACAAGCCTCTATAGAGGGT CGATACATTTTAATTGTTTTTCAAATTTCATGGTCTCATTAAAAGATGGAAATATTCTAA ACTCATTAACACTCCAAATTCAAACTCATAATTACAAAATGATGCCAGGATCTAAACCAT TAACTGTAGTATACAGATTATATTACAAAGCAATGTACTCTGTAATTAATACTAAGGCTT TAATTCATAGCCCAAAAGGAGAAACTCTCTTAATACAAACAAACATGACCAGATCTCATA CAGTGATACCCAGAACCATTCAATGGCATGAAATACAACTTCCAAATAGATAGAAAATAG AAAGAGCTATTAATCCTGTTATCATTCAGAATACAGAAATAAACCATGTAGCAGAATATA GGGATGGTTTGGTAGAACTTATCTTTAATAGACCTCCAAGAGTACCCCCTAGACAATCTT TTGATACAGAACAAGCAATAACCTCTATAAGAAGTATAAATATTTTAGGAGAAAATCCAT CCATAATAGGAACAGACTTTAGAATAGCTAGAGCATCTGTAGCCTCAATACCTTCTACGA TTAGGACAAACTTACAAGGAGTAGACAATTCGTCAAACATACCACAACCTGTGTACACCA GATAGCAAAATAGTCCAACAAACTCTCCCAATATGTCACCAACATACTCCTCAATGACCA ATAATCCAAATCTAAGTGCAAATGATGACCAAATTCAAAAATGTTTGTATTAGAAAAAGA ATTTAAAATTAACAAGGAATGGTGCAGAAACCATTTTTATTCAAAGCAAAACAAGAAAAA AAAGAGAAAATTATTTCAAAAACTATGATCAACAAAAAGATGAAATCCTAAAAGAATATT ATAATTTCATGAATAAACATAAAATCTTAATAGAGTTCTTTAAATGGTTTGAAAACCATT ATGAACCCCAATTAATAAATACTGTAAAAAATATTACTAAATGGCAAACAAATAAAGGAG AAATTGAATCACAACATCCCCTTCTAACAGAAGTTTAGTATACACACAAAAATGTAGGAA TCAGAGCAACCCCATTAAGGACGCGATCTTCTGACGTAGGAGAAACTGTTTCCTCAAAGG ACATAAAGATGATAGTTGAACAAAATAATTATACAAATCTAAATCTACATACTATATCAA AACAATTAGAAAACATAGAATCTATAGTAGAAAACCAACCCAAAATCACCCAAAATTTAC TGACAAATACAGAAGAAATAAAACCCTCAAAACCTGTATTTACACCTTTTGAAGTTTCAA AAAGATACCATCAGGAATAACGAAATCAATTTTTAAAAGAAATACAAGCTCGCATTGATG CTGTAGAAAGTCTAAATTCAGGAATAATAATCCCTGAAACACCAACACAACAAACTCACA CAATCAATGTAGTAAATAACCAAACAGATACTCAAAGCAACTCAGATGATTCAGAAGACC AACAAATTAATAAAATGGTTTGGAAAGAACAACCTCAAAGACTTTATTACCCCAAGATTA CTGCACCAGACATAAATATTGAAGAAAAACCATTATTCCAAAATAAGTACAATGTTAATG CAATTTATGAATAGAATATAGATGGAATATTTGAATATAACATCCTCAGTACACTTCAAC AAATGACAATGGTTTCAAATGTATACAAAACTCAAAACCAAACTGGTCAAATTACAGATC ACGCCATAGCAAATCTTTTAGTCGCTGGCTTTACTGGACAATTAAAGGGATGGTGGGATA ACTATCTTACAACAAATCAACAACAAGAAATATTAAAAGCCACGAAAAAAGATAATGAAG GCAATAATATCTTAGATAGTCAAGGAAGATAAATACAAGATGCTGTTATAACCCATATTT TCTCAATATCTAAACATTTTATAGGAGATCATTCTCACCTTAGGGACAAAAATTCAGAAT TATTGTCAAATTTAAAATGCAAAAAATTGACAAACTTCAAATGGTGCAAAGATATGTTCA TGACAAGAGTAATGCAAAGATCAAACAATAATCAACCATTCTGGAATGAAAAATTCTTAG CTCGACTTCCTACATTGTTAGGAGAAAAAGTTAGAAATCAAATAAGAGAAAATTATAAAG GCATAATACCTTATGAAAATCTTACATACGGTGAACTAATAAATTTCACTCAAAAAGAAG GACTAAAAATTTGCCAAGATTTAAAACTCCAGAAATATTTGAAGAAAGAAAAAAAGCAAT ATGCCAAAGAACTAGGATCATTCTGCCAACAATTTGATATCAAAGAACAACAATTCACCT CAAAACCCTACTGTTCTAAAAAACCAACAAAATAGAAGAAAAATTTTCAAGAATATTATC AGAAACCAAAATATAAAAAATACAGAAAACAAAAACAGAAACAAAACAAACCCAGTTATG TTGATAAAACAATTAAATGTTTTAGATGTGGAAAAACTGGTCAAATTTATAAATATTGTA AAATAAAAAAGAAAATTAATTAACTCCAACTTGGGGAAGAAATAGAACAGAAAATTAATG AGATACTTTTAGAAACTACAACTGATGATCATACAATAAAAGAATATCTAGGAAATTGGC AGATAGATGAAATACAAACAACTTATCAATCCTCAACAGAAACAAAAAATCTAATACAAG TCTTAACAAAAGACCAGGAATTCATGATTGAAATCATTGATAAGATACAAGACTCAACTC TAAAGAGAGAATATTTACAAAAACTAAAAGACTCAATAAAAGAAAAATCTAATAAAACTA AACTCCCAAACCATGAACCTATATGTAACATTAAAAGCATCATCTTTGACAAATAAGAAA AAACAAAACCAAGAAAAATAACAAAAGAAGAATTAAATTTAAAAATACACACCATAAAGG CAGAAATCTCTGAACTCAAAAAAGAACAACAAATTAAATAACAAATTGAATTTGTTAAGA ACACAGAAATTCAAACAAACCAATGCTCTTCAAAATTGGAAATAGAATATCAAAAAACAC AAGAATATATGATGATTCTTATTGAAGTATCCATCCAAAGATACCTAATAAAAATAAAAC TCTTAATTAATGAAGAATTCCAATTAGAGACAATAGCACTATTTGACACTGGTGCATATC AAAATTGCATCCGAGAAGGAATTATACTAAAAAAATACTATGATAAAACAACAGAAGGAT TAAAAGCAACGAATGGTGAAAAACTCAAAATGACATACAAAATATCCAATGCAGAGATAT GTAACCAAGGAATCAAGTTCAAAACACCTTTTCTAATGGTCAAAAATATAACTCAAGATA TTATTTTAGGAACTCCTTTTATATCATTATTGAAGTTGTATAAAGTCACTCACCAAGCTC ATCACTACCAAAATATTAAAAACCAGAATAACTTTCCCTTTTGTAGAAAAACCAAGAGTT AGAAACATTAATTTGTTAAAATATCTATCAATTCATACAAATCAAATTAATTCTTTAATT AATCATAAACAAAACCAAATCACCTATTTAAAAGAAAAAGTCACTTTTGAAAAGTTAGAA CAGCAATTAACCACTCACAACATTAAACAAAAAATTGAACAAATTAAGAATGAAATAGAA AAAACAATATGCTCTGATATCCCCAATGCTTTTTGGAACAAAAAAAAAAACATGAAGTAG AACTACCATATGTAAAAAAGTTTGATGAAAAACAAATCCCTACAAAGGCCAGAGTCATTC AAATGAATAAAGAAATGGAAGAATACTGTAAATAAGAAATCCAAGATTTACTATACAAAA AATTAATTGGAAAAAGTAATTCACCCTAGAGTTGTTCTGCTTTTTATTAAGTAAAAAATG TAGAAATAGAAAGAGGAATACCAAGATTAGTAATTAACTATAAACCATTAAATAAAGCAC TGGAGTGGATCAGATATCCTATTCCAACAAAGAAAGATCTTTTACATAAACTTTGCAATG CTCAAATTTTTTCAAAATTTGATATGAAGTGAGGATTTTGGTAAATCCAAATCAAGGAAG ATGAAAGATACAAAATAGCCTTTACTATCCTTTTTGGACAATACGAATGGAATGTGTTGC CCTTTGGCCTAAAGAATGCCCCATCCGAATTTCAAAGAATAATGAATAAAATATTCAACC AATATTCTCAATTCACCATAGTATATATTGATGATGTTCTAGTCTTCTCAAAAAACCTGG AAAAACATTTTAAACATCTTAAAATATTTATCGATATTATTAAAAGAAATGGATTAGTTG TGTCCAAATCCAAAATCAACCTGTTTCAGACCAAAATCAGATTTTTAGGTCATTATGTGA |