ACCTCCTCAGGTAAAAGAATTAAATTTATTAAAGGAAATCTCCACCTCCAAAATAAATAT
AATCTCTAGAAAAAAGAATCATATCAATTCTTTACAAAAAGAAATAAAATATTATAAATT
AGAAGAACAGCTCAAGAGATCCAATATTCAAAAGATTATTAAGGATTTTCAAGATAGGAT
AGAAAAGGATCTATGTGATTTAAATCCCATGGCCTTTCATCATAGAAAAATACATACCAT
AACATTACCATACATAGACGGGTTTAATGAGAAAGACATCCCTACCAAAGCCCGGCCCAT
TCAAATGAATGAACAATATTTAAAATATTGTAGAGAAGAAATAGGAGAATATCTCAACAA
GGGCCTGATTCGCCACTCCAAATCTCCTTGGAGTTGCACAGGGTTTTATGTCATGAATGC
ATCTGAGTTAGAAAGAGGAGCCCCTAGATTAGTCATTAATTACAAACCCTTAAACAAAGT
ATTAAAATGGATAAGATATCCATTGCCTAATAAAACAGATCTCATTAAAAGATTACATAA
AGCAACAATATTCTCAAAATTTGATATGAAGTCAGGATATTATCAAATTTCGGTCAAGGA
AGAAGATCGATATAAAACCGCCTTCGTTGTCCCTTTTGGTCATTATGAATGGAATGTAAT
GCCACAAGGTTTGAAAAATGCACCTAGTGAATACCAAAACATCATGAATGATATATTCTA
TCCATACATGGACTTTACCATTGTATATCTAGATGATGTCTTAGTATTCTCAAAAGGCAT
AGATCAGCATGTTCAACATTTAGAAAAATTTATAGAAATCATTAAGAAAAATGGATTAGT
AGTTTCAGCAAAAAAGATGAAAATCTTTGAAACCAAAACCAGATTTTTAGGATATGAAAT
TCATCAGGGACAAATTACCCCAATACAAAGATCGTTAGAATTCGCCAAAAACTTTCCAAA
TGAATTAAAAGAGAAAAATCAATTACAAAGATTTCTAGGTTGTGTTAATTATGTAGCAGA
TTTTATCCCCAACATAAGGATAATTTGTGCCCCTTTGTTCAAAAGACTTAGGAAAAACTC
TCCGCCATGGTCTGAAGAAATGAGCCATAGTGTTAGAGAAGTCAAAAGATTAGTTCAAAA
CCTACCTTGTTTAGGAATACCAGATCCAGATGCTTCATTAATTATAGAAACCGATGCATC
AGAATTAGGATATGGAGGGATACTTAAGCAGGTAAAACCTCAGTCTTCAAAAGAACAAAT
AGTTAGGTACCATTCAGGTATTTGGCACCCAGCTCAACAGAAATATTCCACAGTCAAAAA
AGAAGTTCTTTCAATAGTTCTATGTGTTCAAAAATTTCAAGATGATGTTTTTAATAAAAA
AAATTTGATAAAAACTGATTGCAAAGCAGCACCTTCAGTTTTACAAAAGGATGTTCAAAA
CCTAGTTTCAAAACACATTTTTGCCAGATGGCAATCTTTACTTTCTTGCTTTGATTTTGA
AATAACTCATATTAAAGGAGATAGTAACTCCCTTCCAGATTTTCTAACCAGAGAATTTTT
ACAGGGAAAACATGAGTGATACAAAACCCAAATCAAAGGATCAATATGGACCCCCACTGG
GTTCGTCAGCATCATCATCACCATCAGGATCAAAAGCAATAGTAGTAACCCCTATCAAGG
TTGCTGAATCTTCAATACCAACCACCCCTTCAAAGCCTTCTCAAAAACTCACCACAGCTC
AAATTGTCAAAACACCTCACCAAAAAACCTCACTAGTCCCATTAACCAATAAATATACAG
TATTAGCTCAAAGCCCTTCAAAATCCCCTGCCAAACCCGAGCCAACCGAATATCTGGAAA
AACCAGAAGGTGAGCCATCTCTCATTATAGAAAGAGAACATTTCTCTTTAAGTCCTAGAG
AAATAGCCACTCAATTATTCCCTACCAACTTTCATTATGTCCCTGGACACCCCAAGAAGA
CCAGATTATTTTATGAATTCATTCTAGTAGACTCTGACTCCATAGAAGTCACACATAACC
AAGATAAACAAGGAGAAATAGCGTTCTCCAAGATCAAAATCCTTAAAGTCCTTACACCCC
AGGATTGGAATGCTCCTCTTCATTATTTTAAGCAGTTTTCTAGACAGTTCGACCCTCCTA
GTTATAACTACTTTGATTATACAGATGCCTGGTATTACGCCTTGTATCTTTATCCTTATC
AACACTCCTGGTTCATTTGGTTCAAAAAGGGAATCTCTTTAAAGTTCCCTCAATGGTTTA
AAGTTTGGTTTTGCAAGGTAGGACTCGATGAGTCTATCTTTCCCGAAGAAGTAAAACCAT
TATTCAAGTACTTTGCTCAAAAGTCAAATTTCATTATGGAAGACAAACTCCTCATGTTCA
CAGCTTCGCAAGCCATATCTTGGATTTTAACCTGGGATTGGAGAACTGTAGAAATTTATG
AGGATACAGAACTCTATCAGCTCTATCGCATTTTTAAAATAAAATGGTGGGCAAAATTCA
ATATCTCTCTAATTCAACAGACAAAACTTGAAGCTTGGATAAAGACTTATCAGCTTACTC
AACAAAGCAAGAAACAGCTGTCAACTACCCCTGTTTCTCGTCTCAATCAAGAAAGTTCAT
TTCTTCAAGAAAGATCAAGGCTCATAGCCGAATTAGCCGCAGCAAGCTCTCCCCAAGAAT
TTCAAAAGAAAATAGATATGATGAGTCAGAAGTCTGGCTCAGATACTTCATCAGTCAACA
GCCAGAACTACCTTCAAGAAAATGAAGATGACTGTTTAGGCATCAACTATCATCCATACA
CTTAAGGACAAAAGGTCATTATCAGCCCTTCTCATCATGATCAAGAAAGAATCTGCTTTC
TAATATTGGCCGACAAGGAATCCACTTTCATTATTAAAGCTACTATCCACTTTCATTATT
AAAGTTACTTTTCATTAACTGTAGTTACTTTTATGTAAACCAGAGTTACTTTCGAAAGTA
ACCATGGTCAAAACTTGTATAAATAGGTAGCTTAGTAAGAGTAAGAGGCATCGGGTTTTT
GACCTACCTCTCTCTCTCTCTCTCACCTACCTCTCTCTCTATGTGTGTAATCCCTGCAGT
TCTTTGAATAAAAGCTTTTCTGTAAGTACTTTTCCATCATGTTTTTTTTTAGCTTCCGTA
AATTC
>LjapCV_sc2 [endogenous-virus-name=Lotus japonicus C virus] [strain=sequence cluster 2] [host=Lotus japonicus accession Miyakojima MG-20] [moltype=genomic DNA] 7298 bp
TGGTATCAGAGCCTTTTCCCGTGAGGGAAGGGTTCTGGAATCAGTAGTTAGTTTTTGTTG
GATCAATCTTTTGTTTTTCTACAACTGTATTTCTTCTTACTGTTTTCATTAATCACCTTG
TTATTATCCTCAAGTTCTTAAGACTTAGTGTGAGGTATCCCTGGAGTCTAGTGGTCCCGG
CAGTAAAGCCTGAGAGGTAGTGAGACCGTTGGTTTAGCTAGATTGGGAAGAAACATTATT
ATTAAGATTCTTAAGTGTATAACATGGCTAGATTAATCAAAACCCTAAGTGAAATGAGTT
TAGGAAAGAACAAACAGATCATGATTCCATCAACATCCAACTCTGGTTCTAGTAACCAAG
ATCAAGAACTCTCTAGGATAGCCCAACAAGAGTTAGAAATAGCTTCAATAGAAAGAGCAC
TTCAAAATTGGTCAATCCCTATAGTCAAAAAGAAAGAAATTTATAAGCAACATACTTTAT
TCAATAGATCAGATGATTCTATTTTTACGATAGAATGTTGTCAACATAGTTCTGATCATA
CAAGTACTATAAAATTATTAAATGAAGATGTTTTAGATCAACACATCAAAGATGGTTTTA
ATTTCATTCATGTAGGTTTAATACAAGTAGCCGCAAAACCTAACTTTCGTTTAGGAATCA
ATTCCCCAATAATTGTAATGTTACGAGATATGAGACTATTAAAACCACAAGATTCACTAA
TCGCAGTCTTAGAGTCAAATCTTCATGATGGTCCTGTCTTTTTTAACTGCTATCCAAATT
ATGCCATAAATCTTCAAAATAGTTGGACTAAGAATGCTTTACAATTAGATTTATTAGCAA
ATAATGACATATTTGCAGAAGAAAGTGATCCTTTCTCAATAATATATAGAATATATTTTA
AAGTTTCAAAGATTAATTATAATTTTAAAGCCTTAAGATCATCACCAAAACAAGAAACCA
TAATGTTAGAAGCAAATTTAAAAAGATCTTCAGTACAGGTTCCTAAGAAGCTTACTCATG
AAGAAGTTATGAGTAAAATTCCTGAGGAATGGGTGTTCAAGAATTCACTACCTCAACCAA
AGGTTCATAATACTCAAGTAAGAGAATTGTTTCAAGAAGGAGCAAATCTCACTTTAAGAA
TGAATAGGTCAAATTCATTTAGTATTAGAACTCCTCAACAGTTATACAGAGTAGATCTTC
CAAGATCTTCTGTATCATCAAAACTTAAAGGAATAGATACAACGTCTAGTCCTAGCATAG
CAACACCTATATATCAAGATGAAGAATCTAGTAACTATTCTCCAACCCCATCTCAAATCA
ACATGTTAAGTAGGGTAAAATCTAGTTTTGAAATAAATAAAGATTTCATTAGAAAAGATT
TTATGGCTGAATACAACAAAGATAAAAGATTATGGTACTTCAAGAATTTTAGTAAGCTAG
AAACTGAAAATCTTAGAACCTTATATTATGAAGAGATGGAAGTTTCTGAAACAAACATCT
ATTTTTTTGATTGGTTCGAAAATTATTGTATTAAAAACAACCTTAATTATCCTTTTTGGA
AAAACGTCAATCCAATAACAAAAATAGATACTATCTGGAAAACTCCTGACAATAATACCA
TTACTTCAGAATACCCTCCACAAACTGGAGTCAAAATAGCAATAAAAGATGGTCAAGAAA
TCGAAGCATCTCCTTATAAGGTAGAAGCTAACAAAGTTCATCAACAATTAAATTTTGCTA
ATACCATGTTAACAGTTATGTCAAAACAATTAGGAAGAATAGAGGTTCAAAAACCTGAAC
CATCTACACCCAAAAAATCCCCTTCATCATTTACTCTAGGAAACCCTTTACAGACACCTA
TTTTCAAAATTCCTCAATACACCAAGGAAGAATTTAATTCCTTTAATCTCTCAGGGAGTG
TAGAAAAATTGAAAGAAAAGTTAAATAAGCTTTCAATAAATCATTTAGATAAAGATTTAA
ATATCAATAAAATTAGAAAGTTTGGTCCAGATAACAACACAAGAGCCTACTATCCAAGAC
CTTCCTATTCTGACATGAGATTTGAAGAAAGAAAAGAATTCATTCAAAATACCTTTAGTG
GAACTAGCCTCGACGAATGGAATATCGATGGCTTTAGTGAACAAAATATACTAGATATTA
CTCATCAAATGATTATGGCCGCCACGGCCTATAAGGTTCATAACAACACAGATAGAAATG
CAGCATTAATGATTACTCATGGCTTCACTTGTCAGTTACGTGGCTGGTGGGACAACATCA
TGACCCCTGAAGATAAATCAACCATATTAGAAAAGAAAAAAGAAAATGGAGAAGAAGATG
CTGTAGCAACATTAATATATACTATTATACTTCATTTCATAGGAGATCCCAGCATATTTA
GAGAAAGAGCTTCAAGCCAGCTCTCTAATCTCTATTGTCCTACCATGTCCGATTACAGAT
GGTATAAGGACACCTTCTTCTCAAAAGTAACCCTAAGAGAAGATGGCAACAGCGCCTTCT
GGAAGGAGCGCTTTATTGCAGGATTACCTAGATTGATGCAATCAAAAGTATTAGATAATT
TATCACTTTTCAATCAAGGGAATCCAATAAACTTTGGTTCACTATCATTTGGACAACTTC
ATAATACTATAGTACACACAGGAATACAAGTTTGTACTGACTTCAAACTTCAAAACAAAA
TGCAAAAAGATATGCAAATCTCAAGAAAAGAAGTAGGTAGCTTTTGTGAACAATATGGAG
TAGAACCTTTACAAGCTCCTAGTTCAAAAGCTAGAAGGATTAATAGATCCAAAACAAAGC
CATCTCAGGGCTATAAAAAGAGAAAACCATTTCAAAAGAAACCATATGAACAAAATCCTT
CAACTCAAAAACCTACAAACAAAAAAACTGTAAATCCTAAAAAGAAAAATGTCTGCTGGA
AATGTGGAAAGCCAGGACATTATGCAAACAAATGTAAAACTCAACAAAAAATAAATGAAT
TAGATTTAGACCAAAAACTCAAAGATAGTCTAATCAGTGTTCTCATTAATAATGAAGATC
CTCACTACTCTTCAGAATATGAATATGAAGGAGATGAAGACCAAGATGTAAATCTGGTCG
AATACTCATCAGACTCTCATTCTTCTTCAGAAGAAGAAAGAGAATGTGTCAAAGATAGTT
CAGGATTCTGTGATTGTGCAGGATGCTTAGGACAAAGTGTCAATATGCTAACACAAGATC
AAACTATGAGTTTAATCTCTATAATAGACAAAATGGAAGATTCTCCTTTGAGAGACGAAT
TCCTACAACAACTAAATCTTTTAGTCAAAAAGGAAGAAACCTTGAAAAAAGATATTAGTC
CTCCAATAAATAGTATGAATGAAATCTTTAACAGATTTCGACCTAAGCCAACAATAACTT
TATCAGATCTTCAAGAAGAAGTGAAAATATTAAAAGAAGAAATTAATCAACTAAAGCAAA
ATGATCTTAGCTTAGAATTTAGATTAATGGAACTAGCTGGAATAAAGATTATTGAAACCC
AAGAAACTTTAGCTAGTGCTTCAGGAATAAAACAAATTCATGATAAAAATAATGAAGATA
ATAATAATCAAGAACAAAATGAAAATTACCTTAATCTTCTTAATATAGTTATAACTCATA
AATGGCATTCTGAAATAACCTTAGTCATTAATGATTTTCGAATCAATATAGTAGCCTTAA
TTGATAGTGGCGCAGATATCAATTGCATTCAAGAAGGGTTAATTCCTACTCAGTTTTATG
AAAAAACTAAGGAAGGAGTTAATAGTGCAAATGGATCCAAAATGAACATTCAATACAAAC
TATCAAATGCCAAGATTTGCAAAAACCAAATCTGTTTTAAATCTTCATTTGTACTAGTCA
AAAATATGACAGAAAAGGTCATTTTAGGAACTCCGTTCATCTGCCTATTATACCCTATCG
ATAAAATAGATGAAAAAGGAATAGTTACACAAGTCTTAGGAAAGACTATTACTTTTCCAT
TTATAAAACCTCCCCAGGTAAAAGAATTAAATTTATTAAAAGAAATCTCCACCTCCAAAA
TAAATATGATCTCTAGGAAAAAGAATCATATCAATTCTTTACAAAAAGAAATAAAATATT
ACAAAATAGAGGAACAACTCAAGAGATCTAATATTCAAAAGATTATTAAGGATTTTCAAG
ATCAAATAGAAAAGGATCTATGTGATTTAAATCCCATGGCCTTTCATCATAGAAAGATAC
ATACCATAGCATTACCATATATAGACGGGTTTAATGAAAAAGATATCCCTACAAAAGCCC
GGCCCATTCAAATGAATGAACAATATTTAAAATATTGTAGAGAAGAAATAGGAGAATATC
TCAATAAGGGTCTGATTCGCCACTCCAAATCTCCTTGGAGTTGCACAGGGTTTTATGTCA
TGAATGCTTCTGAGTTAGAAAGAGGAGCTCCTAGACTAGTCATTAACTACAAACCCTTAA
ACAAAGTATTAAAATGGATAAGATATCCATTACCCAATAAAACAGATCTCATTAAAAGAT
TACATAAAGCAACAATATTCTCAAAATTTGATATGAAATCAGGATATTATCAAATTTCGG
TGAGGGAGGAAGATAGATATAAAACCGCCTTTGTCGTCCCTTTTGGTCATTATGAATGGA
ATGTCATGCCACAAGGCTTGAAAAATGCACCTAGTGAGTACCAAAACATCATGAATGATA
TATTTTATCCATATATGGATTTCACCATTGTATATCTAGATGATGTCTTAGTATTCTCGA
AAGGTATAGATCAGCACGTTCAACATTTAGAAAAGTTTATAGAAATCATTAAGAAAAATG
GATTAGTAGTTTCAGCAAAAAAGATGAAAATCTTTGAAACTAAAACTAGATTTTTAGGTT
ATGAAATTCATCAAGGGCAAATTACCCCAATACAAAGATCATTAGAATTTGCAAAAAAAT
TTCCAGACGAATTAAAAGAGAAAACTCAATTACAGAGATTTCTAGGTTGTGTTAATTATG
TAGCAGACTTTATCCCCAACATAAGGATAATTTGTGCCCCTTTGTTCAAAAGACTTAGAA
AAAACTCCCCGCCATGGTCTGAGGAAATGAGCCATAGTGTTAGGGAAGTTAAGAAATTAG
TTCAAAGTCTACCTTGTTTAGGAATACCAGATCCAGATGCCTCATTAATTATAGAAACAG
ATGCATCAGAATTAGGATATGGTGGGATACTTAAACAGGTAAAACCCCAGTCTTCAAAAG
AGCAAATTGTTAGGTACCATTCAGGTATTTGGCACCCAGCTCAACAAAAGTATTCCACAG
TCAAAAAAGAGATTCTTTCAATAGTTCTATGTGTTCAAAAATTTCAAGATGATGTTTTTA
ATAAAAGATTCTTGATAAAAACTGATTGCAAAGCAGCACCTTCAGTTTTACAAAAGGATG
TTCAAAACCTAGTTTCAAAACATATTTTTGCTAGATGGCAATCTTTACTTTCTTGCTTTG
ATTTTGAAATAACTCATATCAAAGGAGATAATAACTCCCTTCCAGATTTTCTAACAAGAG
AATTTTTACAGGGAAAACATGAGTGAAAAACCCAAGTCAAAAGATCAATATGGACCCCCA
CTGGGTTCCTCAACAACATCAAAAGAAAAAGCACTAGCAATAACCCCTCTCAAGAGTGCT
GGATCATCCGCACCAGCCACACCCTCAAAATCCTCTCAAAGACTTACTACCTCACAAATT
GTCAAAACACCTCCTCAAAATCAAAAAGCTCCATTAGTCCCACTGACTAATAAATATACT
GTATTAACTCAACCCTCTTCAAAATCCCCTGTCAAACCAGAGTCAACAGAATATTTAGAA
AAACCAGAAGGCTTGCCCTCTCTCATCATAGAAAAAGAATATTTCCATTTATATCCAAAA
GAGATAGCTACCCAATTACTTCCTCCCAACTTTCAATATGTCCCAAGACACCCCAAAAAG
ACCCGACTTTTTTATGAGTTTATCCTCGTTGATTATGACTCAATAGAGGTTACTCATAAC
CCTGACAAACAAGGAGAGATAGCCTTTTCAAAAATCAAAATCATCAAAGTCCTTTCAGCA
CAAGATTGGAATGCCCCCCTTCATTACTTCAAAAACTTTTCTAGACAGTTTGACCCCCTA
GTTATAATTACTATGACTACACAGATGCCTGGTATAACGCCCTGTATCTTAAACCCTTTC
AACACTCTTGGTTTATATGGTTTCAAAAAGGGATTTCCCTGAAATTCCCACAATGGTTCA
AAGTCTGGTTCTATCAAGTTGGTCTGGATGAATCAATTTTCCCTGAAGAAGTTAAGCCCT
TATTCAAATATTTTGTTCAAAGGACCAACTTCGCTATGGAGGAACAGCTCCTTATGTTCG
CAGCTTCCCAAGCCATCTCATGGATATTAACTTGGGACTGGAGATCTGTCCAAATCCTTG
ATGATACAGAATTATACCAACTTTATAGAATCTTCAGGATAAAATGGTGGACAAAGTTCA
ATATTTCATTAATACAACAAACCAAAATTGAAGCATGGATAAAAACCTATCAGCTTACTC
AAAAGAGCAAGAAGCAATTATCCACTTCACCGGCCCCCTGTCTCTCTCAAGAAGCCTCAT
TCCTTCAAGAAAAATCAAAAATAATGGCAGAACTAGCCTCGGCCAGCTCGCCAGTAGAAT
TTCAAAAAAGATTAGACATGATATCAGGAAGTCAGAAATCAGATTCATCAGCTGAAGACA
CCTCATCAGTCAAAATGGAAAATCACCTTCAAGAAAATGAGGATGACTGTTTTGGAATCA
GTTATCATTCATTCACCTAATCGGCCCCGGGTTTCCATTACAAAAGGACAAAAAGATCAA
CATCAAAACTCCTCATTATGGCAGACAGAGAATCTGCTACTTTTATCATAATCTACTGCT
TTTATCACGTAACCCTAGTTGCTTTTGTAAACCATAGTTACTTTCTAAAAAGTAATCATG
GTCAGAATAACCCTAGTTGCTTTCAAAAAACCAGAGTTACTTTTACAAGTAATCATGGTT
AGTTTAATGTGTATAAATAAGCATCATAGAGCTGAAGAGAAGGCATCGGGTTTTCACCTA
CCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTTTCCCCTAAGTATGCTTGTAA
TTTCTGAAGTTCCTCTTTGAATAAAAGCTTGTTTCTGTAAGTACTCTGAGTTTTCATATT
TTCATATTTGCAAAATGTTTTTTATCTTCCGCACCTTC
>MdomV_scMd1 [endogenous-virus-name=Malus domestica virus] [strain=sequence cluster 1] [host=Malus x domestica cv. Golden Delicious] [moltype=genomic DNA] [note=complete genome] 7891 bp
TGGTATCAGAGCCAAGTGGTTGGTTATACCATTAGTATCTGAATACTCTGTTTATACTCT
TTAGATTTATTCAGTCTCTTTATAGTTAATCTTTTCAGTTTAATCTTCTTAGTGTCTTCT
GATCTCCATAAGGTCTGAGCAGTAAGGCGTCACCCAAACAGTAAGTCCCGGAGGATAGGG
CCTGAGCGGCGCGCATGACCCAGAGAGCTTGGTGTTTAGAAGCACTAGTAAGATTTTCTG
TTAAGGTTTCTGTATTTTGATTGTTTGAATTTATTAAGTATGAGTAGATTGTTTAGATCT
AATTCTATGGCCAGCACTAGCTCTAGATCAAATTTAGGAACTATACCTGATATTGTCAAT
GAAGAACAAAAATTTGAATTTCAAACAGACAGTAGTCTAGATTTTGCTGAATGGAATATT
CCAAAAATATCTTCAAAAAATATTTATAAAAAGAAATGGGCATTCGCCTCTTTTAAAACT
GAACACCATGTTAAAACGGTTGAACAAGCTTATGCTCTTAGTAAAGATCATGAAACTTGC
CAATTGTTTACCCCAGAACAAATTAATTCCCATAGGAAAGATGGTCATAATTATATCCAT
ATAGGTTTAGTGCAAATTGCAGCCAAACCATTAACACGTAGAGGTCTTAATACCTCTATC
CTCTTATGTCTTCGAGATGCTAGATTCACTGACTTCAGTGATAGCATACTTGGTATGGTT
GAATCCAGCCTCTGTAATGGACCTATCCACTTTGACTGCTTTCCAGATCTTACCATAAGT
CTATCCGACCCACATATGTTAAAAGCACTTACACTAAATATCAAAACTTCAGGATACAAA
GTCCTTGAAGGAACACAGCCTTTGGCCTTAATTTACAGAATTTATTATAAAGTCACTGGC
ACAAATATGAACTTTCAGGCTTTAACCAAAAGTCCGAAGGATCATACTCTCTTGATCCAG
ACTGATCAAGAGAATGCCAATATTAAAATACCTCGAACCATTAGGTGGTCAGAAATCAAT
CTCCCTTCAGATTGGTGTCTGATAAACGAGAGTCGGCCAGTAGCCATCCAAAATAGTCTA
GTTAATTTAGACAACGTAGAACAATACTTTGACGGTACGGTTAAAATTAATTTTGATCGT
CCTGCTAGGAAATCCTGTGATTCTAATCGATCACTTAAATCCTTTACTTCCAATAGGAAT
TCTTTCTCTGGATCTATGCCAAACGATAGGCAAGGTCGAGACCAAGAATTAATCAATTCC
CTAGCTAATAGGAAATTAAAATCAGTAGATACAGGCTCATCTGTCACCCAACAAGAATTA
ATAAATGACCTTTTAAATTTCAAACTCCAATCACTTGAGACAAACGCTCAAGTAGTCCAG
CCTACCTATCATACCCCATCCATTCCTCCTAAGGAAGAACAAACATCCCCAACTGCTTCT
GATTTTGATGCAGAACCAGTACATCACCAACTATTGGTTTTAACCAGACAAGAACCTTTT
AAATATGATCGTAAAAAACTCTGTAGAGACATAGAAGCCTTAGAAAATGTCCCTAGACGA
AACATCTTCAGAAGTAAATATACTACTGAAGAAAAATTAGAAATCCATAAGGCATGGAAA
GACTTCATGCAAACCAACAGACTTGAAATATTTTTCTTCGACTTCGTAGAAAAACATTAT
GAGTCTGAAAACCAAGTAAAGGTAATAACCAAAGAAAATTGGCTTAAAGAAGACAAGACA
ATTGTCTCCTCTAGTCACCCTCCACAAGAAACTATTCTTATTAGTACTGCGAATACGCAG
GTCCCAGCCTCACCGTTCAAACTTCCGAAGGAAGATGCAGGTGTCAAACCTGTTATTGAA
CAAAACAATTTTACCAACCAAAGCCTACATATCATAGGAAAACAGTTGGATAAAATTGAA
ACCAAGGTTGACAATTTGTCAATTAAACCACTTAGTAAAGAAATACCTTTAACTAGTTTT
AGAGAGTCACCCTCTTTAAAAACCTCAACATCTATTAAGATAGAACAAATGCTTAATAAG
CTAGAAAAGGACAAATCAGTTCGTGTGATTAATAATCCACATGATTCTGAAACACCTTCC
TCAATTCCAGATTCAGAAGATGAAAGTATTGATTCCATCCATCAAATGGAACAAGCCTTT
CAGAGTCTTGAATTAAAACGTCTTAACGTTAAAAGGACTAATCCTACATCCTTAACCAAA
AACTGGTATCCCAGACCAACACCTCCTGATCTTCAATTTGAAGAAAGGAATTTCCAATCC
CAATTCACTGTTTCATCTGATAAACTCTATGAATGGAATATAGATGGTTTATCAGAACAA
GAGTTATTAAACAAACTCCAACACATCTCCATGGTAGCAAATAGCTATATCACTAATCAT
GACCTTAGTCAAACCCAAATTGTTGACATCCTTGTCTCTGGATTCACAGGAATGCTTCAT
TCCTGGTGGGAAAAACATCTCACTGAAGACTCCAGAAATCTAATAAGAAATGCAGTAAAA
CAAGATGAAGAAGGAATACCTATCTTCGATGAACATCTAGGACGTGGTGTCCCAGATGCA
GTCAATACCTTACTTTATACAATCATACAACATTTCATAGGAATCCCTTCCAACATCACA
TCTAGAATCCATGACCAACTAAGTAACTTAAGGTGTCCAACCCTAAGTGATTTTAGATGG
TATAAAGATGTATTTATGTCAAGAGTTATGCTTAGAGATGATAGTAATCAACCATTTTGG
AAAGAAAAATTTATAAATGGATTACCAAACCTTTTTGCACACAAAATAAGGAATACCTTA
ATTAACGAAGAAGGTATTATACCATATAATGATCTTACTTATGGACATATCATAAGTACT
ATCCAAAAAGAAGGCCTAAAAATGTGCATAGATATGAAAATATCTAGACAAGCACAATCT
GAAAAGGCTATCGCCAAATATGAATTAGGAACCTTCTGTGAGCAATATGGTTTACCACCT
ATAGCTCCTTCCAATCTCAAAAAGAAATCAACTACCTTCAATAGATCTAAGATCTCTAAA
CCACGGACCAACTACTCCAAATATCATAAAGGCAAGTATGCCAAACCAAACCCATTTTAT
GAAAACCCCAAACAGAAAAGATGGAAAGGAAAGAGAAAATCCTCTGGAAAATTCCATTCT
AAAGACAATAGTCATAAGGGAAAATGCTACAAATGTGGCAAAGAAGGCCATTATGCCAAT
AAATGTAAAGTTAAGAAAACCATAAGTCAGTTGAAGATTTCTGAGGAAGAAAAGCTTCAA
CTTATCCAAGCCCTAGAACTCCAAAATACCGACAGTAGTCATTCATCTGAAGATGATCTA
GGTTCCACCTCATCATCCTCATACCAATCTGCCTCTAGTAAGCACTCTACCCCAAACATC
AAGCTCGGATGTCCTGATGCTTGTTGTAAAAATATATCAGTACTAACTAAACAAGAAAAA
CAAGAAGAATTACTCTTAGAGCTAATAAGCAATGTTGAGGACACTGAACTCAAAAGGTTC
TACCTCAAAAAGCTTAAAAACTTAGTCTCCCAAGAAGAAGTAGGCACTAGCCAACCTCAA
ATCCAAAAACCCCAAATCTCTCTTAGTTCTACACTAGCAAAGTTTAGTAAGACTAAGAAA
GAAATTACGGTCAGTGACCTCCAAAAAGAAATTAATCAGATAAAAGAAGAAATTAAACTT
CTAAAATCTGATAATCACGAGATTCGTACACAACTCACTAAAGTCAATACTCCTCCAAAA
GAAGAACTATTCAGTTCCTCTTCTTCCAGTAGTCACCATGAGTCAGAATCTGATACACAT
TCAGAACACTTAGTTCTGAATCTTCTTCACAAAATTAGAATCCAAAAATGGTATTCTAAA
GTAACAATAGTAATTGAAGACTTTCGTTTCGAAACAATTGCATTAATTGATTCAGGAGCA
GACTTGAATTGTATTCAAGAAGGACTAATTCCCACTAGGTATTTCCACAAATCAAAGGAA
ATCCTTAGTGCTGCTAATGAATCTCCAATGGAAATCAAGTATGAACTTCCTAAGGCGCAT
GTCTGCCAAAATGAAGTTTGTTTCAAAACACCTTTTGTTCTAATTAAGAACTTATCTGAC
CCTGTCATACTAGGACTACCCTTTATAGCACTCCTCTATCCTTTTAAAACACATCATAAT
AGGATTACCTCAAAAGTCTTAGGACAGAAAGTCACTTTTGAGTTCTGCCTGGAAACAGAC
CTCAAAAAACTTAGGCATCTCCAGAAGGATAGCACTTCGCGATCCTTAAACATAATCTCT
AATAAGACTAAACATCTTCAATTCTTGAAAGATGATATTCATCACAAAAGAACTGAAGAA
CAACTCAAACAAGAGATTATATCTCAAAAAATCCTTAAATTTGAAGAACAACTTGTTAAA
GAAGTATGTTCTGATATTCCCAATGCCTTTTGGCACCGCAAACAACATATCGTTAAATTA
CCTTATATCAAGGAATTTAATGAGTCAAAAATCCCTACTAAGGCCAGACCTATTCAAATG
AGTCAAGAAGTAATGGATTTCTGTAAGGCAGAAATACAAGACCTTCTTAATAAAGGAATT
ATCCGTAAAAGTAAATCACCTTGGTCGTGTCCTGCATTTTATGTTCAGAAAAGTGCAGAA
CTTGAAAGGGGATCTCCCCGATTAGTTATTAACTACAAACCTTTAAATGAAGTTTTGGAA
TGGATTCGATATCCAATTCCCAACAAAAGAGATTTAATAAAAAGGCTTAGTAAAGCAACT
ATTTTCTCAAAGTTTGATATGAAATCAGGTTTTTGGCAAATCCAAATTCATGAATCTGAT
AAATATAAAACTGCTTTTGTAACGCCTTTCGGCCATTATGAATGGAATGTTATGCCTTTT
GGTTTGAAAAATGCACCATCTGAATTCCAGAATATTATGAATGAGATTTTTAATCAGTAT
AGTCATTTTACAATTGTTTATATTGATGATGTTCTTGTTTTCTCTAAATCTATAGATGAA
CATTGGAAACATTTACACTTGTTTGCTAGGATCATTAGATCAAATGGATTGGTTGTGTCA
GCCACTAAGATTAAGTTGTTTCAACTTAAGGTTAGATTTTTAGGTTATAATATCCATAGA
TCTACCATCCAACCAATTGACCGTGTCATCCAATTTGCAGATAAATTTCCAGACCAGATT
ACTGAAAAAACCCAGCTTCAAAGATTCTTAGGTTCTTTGAATTATGTTTCAGAATTTTAT
CCTCATTTGCGTCAACAATGTAAACCCTTGTTTGATCGCCTTAAGGAGAATCCTCCTGCC
TGGTCTACCATTCATACTTCTATTGTCAAACAGATCAAAAATCATGTTAAGACTTTGCCC
TGTCTTGGCATTCCAACTCCCAACTCTTTTAAGATTGTTGAAACTGACGCCTCTGACGTT
GGTTATGGAGGTATCCTCAAACAGCAAACTTCCTCCGGATCACCTGAACAAATTGTTCGT
TTCCATTCAGGTGTATGGAATCCTGCTCAAACTAATTATAGTACTATTAAAAAAGAAATA
CTATCTATAGTTTTATGCATTAGTAAATTTCAAGATGATTTATTAAATCAAAAATTTCTT
GTTAGAGTCGATTGCAAATCTGCAAAACATGTTTTACAAAAAGATGTTCAAAACATTGCA
TCAAAACAGATTTTTGCACGATGGCAAGCCATATTATCAATCTTTGATTTTGAAATTGAA
TACATTAAAGGCAGCCATAACTGCATTCCAGATTTCCTAACCAGAGAATTTTTGCAGGGG
AAGAATGTCTAATAAAAACACAGCTTCTCCACAAGGCAGTAGCCAACAAAGGAGGCTTCC
CGCCTCATTACCACCACCAAAACAGGAACCTATTCCCGGTTCCTCGGCCTTAGCCATTAC
CAATAGATTTACTCCATTAGGATCAACTCTAGGAAGTATCCGACCAAATTACCAAACAGC
GTTAGTAAACCAGTATGATCCTTTCTCCTCTACCTACAGGCAATCGCCATCTCCCTCAGT
AAGTTATACCAAAACATCTCCTTATATTATTAAACCCTCCAAAGAGTATCTCTTCAGTAT
CCCCTTCAACTACAAACATCTGAAAACACCTGAGGTAATAGCCAAAAAGATGTTTCCAAC
CAATTCCCATTTTCAGCCAAGTGAATTTCACAAAACCCTCAAGTACTATACTACTATTCT
CAATGAGACTTCATCCATCACCATAAAACCTATCTTTGATAAAACCTCTGGCAATCAAAA
CAGAATCCTGTATCATTCCCTTACCATTAATAAATTCTTATTAGAATCAGAATGGCAAGT
ACCTCTTTTTCAGCCTAAACCTTTTAAAAGCAGTAGCTTTCCCAGTCACTCAAACCATTA
TACCTATTTTGATTACATTCAAGCTTGGACTAACATTTTCCTACACCAATCCGAAGATTT
TAGTCATTCATGGTTTATAACCTTTGATCGAAGTTTCAGATTGAATTTTCCTGCATGGTT
TCCCAGATGGTGGTCAGAACATGGCCTTATCTCTGACCTCATGCCGGACGAATTCAAGCA
AGTCTTATCAGGCACTTTCCAGAAGAAGTTCGATAGAACACGTTTTGATGAAGGAATCCC
TTTGTTCGCCCTGTTCATGGCAAAATACAAGGTCCCCTGGATCCTCCGCTGGAACTACGA
GATTGAATCCAATCAAGTCTTTCGACAGAGAATGATCAAATGGTGGGACAAGTTCAACTA
CCAGAAGATCATTGAAGTTGTGCTCAAGGACTTCCCCATGGGTTCTAATCCAGTACCTGC
AGTAGCAGCTCCTCCAGCAACAGCTTTACCAGAACCAACCAAGGAAGAAATCGATTCATT
ATCGGACATTAGTCCTTCTTCCTCTCTCAAGGGCAAGACTAAGTCATCCAAATCTTCGAG
CAGTTCGAAGAAAAAGAAATCATCAAAGCTCAAGGCTCTAGCCAAAATCCTCATGAAGGA
ACTGCAAGAAGAAAATGAAGACAGTTCGGACTCCGACAACTCTTCGGATGCTTCATCACA
ATGCGCAGTAGCCACACAAGGAAATATTTTCCCGCCTGATTCTCAAGACCCATACGAATT
TTAAACTTGTAATAGCATGTATAGGAATTTCTAAATTCGTATGAATGTAATCTCAGTAGC
ATACATTGTATTTAGACTCAGTAGAGTATTATGTAATAACTGCATATGAAGACAAAGCCA
GCCGCAAGTGAAAACAGCAGTAGCAGACAAGGCACTATTCATGAATAGTAAAATCACTTT
TACTATTCATCCATCATTTCCTCCACAGTATTCACCCTCGTGAAAGCCACAGTCACCGAC
AGCATCTTCTGCTTTCGGCCTCTTTACAGCAGTAGCACATGCAAAGCGGGAATCCCGCTT
CCATCCTTCAATCATTCCGGATCACCTCCCTCGTCTATATAAGGACTCTCGAGCTATCTG
GAGAAGGGACTTCGAATTTCGGAAGAAAAAAACTCTGCGTATTCATATGGAACAGAGTCT
ACAGCTTCTCAGCAAAAATATTGTAATAATTATATTTTAATTTTAAAGGATGCCTGCGAG
CTCCAAGATCAGTCTTTAAGTTTTCAAAATCGTCAATAGACGAAACTTCTGTAAGTCTTA
TTTGATTTTCAATAAATATATTTTCAATCGAATATCAGCATCATTAATTTAATCATGAAT
ACTAAATCTATTTTAAATTTAGTTTTGTTTATATATGCTCTTGTTATTAATCCTAAAAAT
TTTATATTGATATTAATCAAGTTCTTTGAATTCCCACATACTTATATCGGATATTTCCGG
CTTCATATGTTACCCTTCTTCCGCACCCATT
>MdomV_scMd2 [endogenous-virus-name=Malus domestica virus] [strain=sequence cluster 2] [host=Malus x domestica cv. Golden Delicious] [moltype=genomic DNA] [note=incomplete at 5’ and 3’ ends] 6541 bp
TTGAAAAAGCAACTGCTCTTAGCAAAGAACATGAAACTTGTCAATTATTCACACCTGAAC
AAATCAGAACTCATAGAAAAGATGGTCATAATTATATCCACATAGGTTTAGTCCAAATAG
CAGTCAAGCCTTTAACTAGAAGAGGTATTAATACCTCTATTTTGTTATATTTACGAGATG
TGCGATTCACTGACTTTAGTGATAGCATTCTTGGAATGATCGAATCAAGTCTTTACAACG
GACCAATTCATTTTGATTGTTTCCCAAACCTCACAATAAGTCTTTCAGATCCCCACATGC
TGAAGGCACTCACTTTAAACATCAAAACTTTAGGATACCAAGTTCTTGAAGGAGTTCAAC
CATTAGCCTTAATCTTTAGAGTTTACTACAAAGTCATTGGAACAAACATGAATTTTCAAG
CCTTAGTCAAGAGTCCAAGAGACCACACACTTCTAATCCAAACCAAGCAAGAAAATGCTA
ACATCAAAATACCTAGAACCATTAGGTAGTTAGATATCAATCTACCTTCAGATTGGTGTT
TGATTAATGAAAGCAAACCAGTTAATATTCAAAATAGTCTAGTCAACCAAGACAACATAG
AACAATATTTTGATGAAAAAGTTAAGATCAACTTTGACCGACCAGCTAGAAAATCTAATG
TCAACCCCCATGAGTTATCCCAGTCACATAGGTCTTTAGCCCCCTGTAGGAATTCTTTTG
CCATATTCACATCTACCAGCATGGTAGATCAAGATCAAGATCTCATTAATTCTTTAATCA
ACAAAAAATTAAAAGCAGTAGAAAATAAGTTCAACTGTCACCCAACAAGAATTAATCAAT
GATTTGATTAATATCAAACTAAAATCAATAAAAACAACCTCTCAAGTCACTCATCCCGTT
TATCAACCCAATACCCAAAATCAAGGAGAACGAACTTCTCCAACAGCATCTGACTATGAC
ACAGGTCAAGTTAATCATCAATTACTTATGTTAAATAAGCCATTTAAAATTCGATGGAAG
AAGCTCAATGTTGACATCGAAGCAACAGAGAACATTCCTCGATGAAATATTTTCATAAAC
AAATATACAAAAGAACAAAAATTGGACATTTACAATAAATGGACCAATTTCATGAACAAA
TACAGATTCAAAGTATTTTTCTTCGACTTTGTTGAAAGATATTATGAATCTAAAAACAAA
TTAAAGGTTATCACCAAAGAAAATTGGGTCAAACAAGATAAAACCATAGTTTCATCTAGT
CATCCCCCACAAGAAACTATTTTAATTTCCACTGCTAATACTCAAATACTAGCCACTCCT
TACAAACTCCCAAAAGAGGATGCAGGAGTCAAACCTGTCATTGAACAAATCAATTTCACA
AATCAGAGTCTTCATACCATGGGAAAACAACTAGATAAAATTGAAATAAAAATAGACAAA
CTTTCCCAACCAAAACCAACATAGGGAAAAACCTCTAGTCAACTTTCCAAAGTCTTCTTC
CAACATAATCGCTTTGAAAACCATCTCCACAAGCCAAAAAATTGACCAAATGTTACAAGA
ATTAAAACAAGAAAAGACAATCAATGTTTTACAACACCCGGAAGAGTCTCATGAAGAAAC
AATTTCTACAATTTGGGATTCAGAAAATGAAACTGAAATAGATTCCATTAGGAAACTCGA
AATTTTTTTCCAAAACCTTGAACTCAAAAGAATCACAAATAAATGAGTCAACCCAACACC
TCTTACAAAAAATTGGTATCCAAGACCAACGCCTCCGGATATTCAGTTTGAAGAACGAAA
CATCCAAAATCAATTCTCAGTCTCAGCTAATAAACTCTATGAATGGAATATAGATGGTTT
ATCAGAACAAGAACTTCTAAACAAATTACAACACATCTATATGGTTGCTAATAGTTATAT
TACCAATAATAATCTTAGCCAAGTACAAGTTGTTAACCTTTTGGTCATTGGATTTACAGG
AATGCTTCATTCCTGGTGAGAAAAACATCTCACTGAACAATCAAGAAATGAAATAAAAAA
TGCAGTTAAAAAGGATGAGGAAGGAATTCCCATCTTTGATGAGCATATAGGACAAAAAGT
CTCAGATGCAGTGAACACATTACTTTTCACCATTATAGAACATTTCATAGGGACATCTAG
TAATGTCACCTCCAGAATTCATGACCAACTTAGCAATTTACGATGTTCAACCTTAAGTGA
TTTTAGGTGGTATAAAGATGTCTCCATGTCTAGAGTCATGCTTAGAGAAGATAGTAATCA
ACCATTTTGGAAAGAAAAATTTATTAATGGATTACCAAACCTTTTTGCCCACAAAATTAG
AAATGTTTTAGTCAATGAAGAAGGTATCATACCATATCATACCCTTACTTATGGAAATAT
TATTAATATTATCCGAAGGAAGGATTGAAAATGTGTATAGATATGAAAATCTCAAAACAA
GTTAACAAAGATAAATCAATAGCTAAATACAGATTAGGAATATTCTATGAACAATATGGA
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