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Table the length and gap distribution of cds in the transcriptome in


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Continued Table S12

Unigene100525_CL32

4.530195868

518

Q940T9(2.00E-20)

Arabidopsis thaliana (COL4)

Unigene135_CL32

0.911286035

251

Q940T9(3.00E-09)

Arabidopsis thaliana (COL4)

Unigene98844_CL32

4.010821709

474

Q9FHH8(7.00E-39)

Arabidopsis thaliana (COL5)

Unigene88705_CL32

1.128516751

329

Q9FHH8(7.00E-17)

Arabidopsis thaliana (COL5)

Unigene45403_CL32

0.362392789

173

Q9FHH8(8.00E-08)

Arabidopsis thaliana (COL5)

Unigene97729_CL32

-1.660690824

451

Q8LG76(4.00E-29)

Arabidopsis thaliana (COL6)

Unigene39563_CL32

-1.000766266

161

Q8LG76(1.00E-06)

Arabidopsis thaliana (COL6)

Unigene92047_CL32

0.061311479

365

Q9C9A9(4.00E-14)

Arabidopsis thaliana (COL7)

Unigene98293_CL32

-1.708865894

462

Q9SSE5(1.00E-32)

Arabidopsis thaliana (COL9)

Unigene93759_CL32

-1.896068887

385

Q9SSE5(9.00E-30)

Arabidopsis thaliana (COL9)

Unigene89454_CL32

-3.508143233

337

Q9SSE5(2.00E-37)

Arabidopsis thaliana (COL9)

Unigene77001_CL32

1.425859208

258

Q9SSE5(9.00E-09)

Arabidopsis thaliana (COL9)

Unigene1012_CL32

-3.455152756

503

Q9SSE5(9.00E-12)

Arabidopsis thaliana (COL9)

Unigene50282_CL32

-2.173602862

183

Q9SSE5(5.00E-07)

Arabidopsis thaliana (COL9)

Unigene105673_CL32

-4.878790896

788

Q9LUA9(1.00E-13)

Arabidopsis thaliana (COL10)

Unigene94889_CL32

-3.089892156

401

Q9LUA9(2.00E-50)

Arabidopsis thaliana (COL10)

Unigene77416_CL32

5.416814068

260

Q9LUA9(3.00E-10)

Arabidopsis thaliana (COL10)

Unigene94889_CL32

-3.089892156

401

Q9LUA9(2.00E-50)

Arabidopsis thaliana (COL10)

Unigene98860_CL32

-4.433725673

475

Q9LUA9(5.00E-47)

Arabidopsis thaliana (COL10)

Unigene29022_CL32

-2.0924661

328

Q9LUA9(7.00E-09)

Arabidopsis thaliana (COL10)

Unigene103982_CL32

10.79652806

666

Q9LJ44(1.00E-07)

Arabidopsis thaliana (COL12)

Unigene98025_CL32

-0.340650662

456

O82256(8.00E-18)

Arabidopsis thaliana (COL13)

Unigene92497_CL32

-0.262196786

370

O82256(3.00E-26)

Arabidopsis thaliana (COL13)

Unigene2502_CL32

0.119527968

327

O22800(3.00E-08)

Arabidopsis thaliana (COL14)

Unigene31846_CL32

-0.189115862

1740

Q9C7E8(5.00E-61)

Arabidopsis thaliana (COL15)

Unigene40091_CL32

-1.04807198

162

Q9C7E8(2.00E-08)

Arabidopsis thaliana (COL15)

Unigene96934_CL32

0.458009732

436

Q9C7E8(2.00E-19)

Arabidopsis thaliana (COL15)

Unigene85909_CL32

0.160962058

307

Q9C7E8(7.00E-33)

Arabidopsis thaliana (COL15)

Unigene51550_CL32

-2.67600452

186

Q8RWD0(2.00E-08)

Arabidopsis thaliana (COL16)

Unigene57238_CL32

-1.972419773

197

Q8RWD0(3.00E-10)

Arabidopsis thaliana (COL16)

Unigene89975_CL32

-6.531887758

341

Q8RWD0(2.00E-07)

Arabidopsis thaliana (COL16)

Unigene105777_CL32

-7.79894642

797

Q8RWD0(2.00E-40)

Arabidopsis thaliana (COL16)

Unigene43518_CL32

1.425859208

169

ACX42572.1(5.00E-06)

Glycine max (CO-like)

Unigene9535_CL32

-1.47

224

ACN62415.1(2.00E-30)

Mangifera indica (CO-like)

Unigene31234_CL32

-2.076641133

468

ACZ26524.1(4.00E-47)

Vitis vinifera (FLC)

Unigene104288_CL32

1.636426194

683

NP_187887.3(1.00E-88)

Arabidopsis thaliana (PIE1)

Unigene29970_CL32

0.148325232

611

XP_002275336.1(2.00E-54)

Vitis vinifera (PIE1)

Unigene31509_CL32

0.988453896

513

XP_002275336.1(4.00E-83)

Vitis vinifera (PIE1)

Unigene78833_CL32

0.75600781

266

XP_002275336.1(1.00E-24)

Vitis vinifera (PIE1)

Unigene88197_CL32

1.174320441

325

XP_002275336.1(9.00E-13)

Vitis vinifera (PIE1)

Unigene92757_CL32

0.978400231

373

XP_002275336.1(6.00E-57)

Vitis vinifera (PIE1)

Floral organ genes













Unigene105402_CL32

1.168886555

765

CAX65661.1(4.00E-94)

Gerbera hybrid cultivar (GSQUA2)

Continued Table S12

Unigene88041_CL32

0.375735729

324

BAH36884.1(4.00E-32)

Chrysanthemum x morifolium (FUL)

Unigene73591_CL32

4.949421164

245

Q40872(1.00E-26)

Panax ginseng (AG)

Unigene80132_CL32

5.528097402

272

Q40872(3.00E-33)

Panax ginseng (AG)

Unigene99293_CL32

5.898346979

485

Q40872(2.00E-54)

Panax ginseng (AG)

Unigene94349_CL32

5.818176631

394

Q40885(9.00E-54)

Petunia hybrida (AG)

Unigene100761_CL32

1.058127423

525

ACO52508.1(3.00E-19)

Vitis vinifera (AP2)

Unigene65197_CL32

0.466501192

217

NP_195410.1(2.00E-35)

Arabidopsis thaliana (AP2)

Unigene35464_CL32

17.85711804

153

AAN47199.1(2.00E-15)

Helianthus annuus (PI)

Table S12. Sequences of the primer sets that were used for RT-PCR and qRT-PCR

Unigene ID

Forward (5′→3′)

Reward (5′→3′)

Application

U107494

GTCCACCATGCTAATAAACTAGC

CCAGGTAACATGTCAATCAAATACTC

RT-PCR

U94889

AAGATCAATGGTGTATTGTCGAT

TCAGACATAAACGACCAAAT

RT-PCR

U103982

TTTCCTTCCATTGCTTTCCA

CATTACGACGCTTTCGCTTC

RT-PCR

U105673

CACAGGTGTTGTCGGTTTAG

ATTTCGTTGGTTTCAGATTC

RT-PCR

U105777

TTATGGGAGGCAAGACGGCT

TTTGTTTCTGGAACGAGGGG

RT-PCR

U31846

ATCTGCTATTGTGCGCCTCT

CCCACCACCACTATTCCCCT

RT-PCR

U16709

AACTTTTGGGTGAAGGACTA

TCATCCGTTTTTCAGGTAAT

RT-PCR

U95436

GCAAAAAGGAAAATACTGGG

TTCTTGATTTCCCTCTTTGG

RT-PCR

U85813

TTGGACGGGAGATTGTGAGC

AGAACAGCAACCGGTAACCC

RT-PCR

U90316

TGACGATGAACATAACCTAC

GTCCAAAAGTAGCATCAGT

RT-PCR

U89447

GATGCAGTTATCCATTCAGCTA

ATTAACAGTTCCATCTGACCC

Q-PCR

U98844

GGGTTCCTATTGTTCCGTTTT

GCTGTCAGATTAGCAAGCCTCA

Q-PCR

U97729

GCAGGCGTGCTAGATGGTATT

ACCAGTCTCAAGAAGGACCCTC

Q-PCR

U1012

AGATGGGATTTCCGTTTTGTAG

GAAACCACCTTCTTTGTTGCTC

Q-PCR

U2502

GCCTGGGGTTTGGATATTCTT

GTCAAGATCCGAACTTTTCAACAT

Q-PCR

U31846

CCAGTGTTACGGTTACCTACGA

GATCCCAGGTCTGATGGCATA

Q-PCR

U31234

TTATGAATCATGTAGCGGCAA

TGTCCTGAATTTTGTGCTCT

Q-PCR

U95436

AATGCAGAGCTAAACGAGAAGTATC

CCTCTTTGGTTGTCCGATGAA

Q-PCR

U16709

AAATGTAAAGTGCATAATCCC

TTTGTCTTGCTTCATCCGT

Q-PCR

U90316

CAATAGGGAGGGTGATAGGA

GCTGTAATGGGAATTGTAGGT

Q-PCR

U94349

AACGGGTTGCTCAAGAAGG

CTGTTGTTGGCATACTCATAAAGG

Q-PCR

U102145

TCTACGGATTCATCAATGGAC

TCCAGCTTCCTTGTGATTCG

Q-PCR

The cDNA synthesized from the CL mixed RNA was used as template for RT-PCR. The PCR protocol was as follows: 94°C for 5 min; 94°C for 50 s, 50-62°C for 35 s, 72°C for 45 s, 35 cycles; 72°C for 10 min; incubation at 10°C.
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