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Table the length and gap distribution of cds in the transcriptome in


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Table S11. List of putative flowing-related genes (photoperiod pathway, vernalization pathway, GA pathway and floral pathway) in the transcriptome of C. lavandulifolium

Sequence index

Expression

(log2 Ratio)
Sequence

length (bp)
Blast hit ID(E-value)

Species (Gene/protein)

Photoperiod pathway










Unigene100582_CL32

0.326323534

520

Q96524(7.00E-65)

Arabidopsis thaliana (CRY2)

Unigene103648_CL32

0.174320441

648

Q96524(5.00E-89)

Arabidopsis thaliana (CRY2)

Unigene35732_CL32

-1.726143886

153

Q923I8(4.00E-08)

Rattus norvegicus (CRY2)

Unigene101088_CL32

-0.105991956

536

XP_002318913.1(1.00E-64)

Populus trichocarpa (PHYA)

Unigene89636_CL32

-1.02731342

338

XP_002318913.1(5.00E-45)

Populus trichocarpa (PHYA)

Unigene1424_CL32

0.688893614

175

O49934.1(7.00E-18)

Populus tremula (PHYA)

Unigene19246_CL32

0.688893614

307

P55141(1.00E-19)

Petroselinum crispum (PHYA)

Unigene100728_CL32

0.475489976

524

P34094(4.00E-86)

Solanum tuberosum (PHYB)

Unigene108329_CL32

0.243381156

1450

P34094(0)

Solanum tuberosum (PHYB)

Unigene93273_CL32

0.021468953

379

P34094(2.00E-52)

Solanum tuberosum (PHYB)

Unigene104425_CL32

-0.001778328

692

P42499(5.00E-115)

Glycine max (PHYB)

Unigene14470_CL32

-0.533498808

356

P29130(1.00E-22)

Nicotiana tabacum (PHYB)

Unigene20441_CL32

0.021468953

677

P29130(9.00E-100)

Nicotiana tabacum (PHYB)

Unigene26747_CL32

-0.181823369

428

P29130(3.00E-32)

Nicotiana tabacum (PHYB)

Unigene26936_CL32

-0.021599769

308

P29130(3.00E-34)

Nicotiana tabacum (PHYB)

Unigene70223_CL32

0.688893614

234

P29130(5.00E-24)

Nicotiana tabacum (PHYB)

Unigene91762_CL32

0.389333332

361

P29130(1.00E-53)

Nicotiana tabacum (PHYB)

Unigene98756_CL32

-0.073414829

472

P29130(3.00E-65)

Nicotiana tabacum (PHYB)

Unigene32695_CL32

0.174320441

150

P14713(2.00E-15)

Arabidopsis thaliana (PHYB)

Unigene103805_CL32

0.097077442

657

Q10CQ8(4.00E-89)

Oryza sativa subsp. Japonica (PHYC)

Unigene107238_CL32

-0.074500106

1000

Q10CQ8(3.00E-124)

Oryza sativa subsp. Japonica (PHYC)

Unigene107356_CL32

0.131603532

1029

Q10CQ8(2.00E-88)

Oryza sativa subsp. Japonica (PHYC)

Unigene62590_CL32

0.632310085

209

Q10CQ8(6.00E-27)

Oryza sativa subsp. Japonica (PHYC)

Unigene38082_CL32

0.051463693

158

ABS87076.1(7.00E-18)

Ailanthus altissima var. tanakai (PHYC)

Unigene103051_CL32

0.837757

616

NP_001077596.1(1.00E-10)

Arabidopsis thaliana (PFT1)

Unigene86913_CL32

2.273856114

315

NP_001077596.1(3.00E-09)

Arabidopsis thaliana (PFT1)

Unigene97926_CL32

0.017516361

455

NP_001077596.1(5.00E-07)

Arabidopsis thaliana (PFT1)

Unigene108608_CL32

0.727163631

1842

NP_173925.3(0)

Arabidopsis thaliana (PFT1)

Unigene64427_CL32

0.688893614

215

NP_173925.3(3.00E-21)

Arabidopsis thaliana (PFT1)

Unigene9587_CL32

1.65572675

212

AAQ73529.1(1.00E-21)

Arabidopsis thaliana (PFT1)

Unigene81039_CL32

0.379565556

277

AAQ73529.1(5.00E-13)

Mesembryanthemum crystallinum (ELF3)

Unigene82561_CL32

-0.472261178

285

AAQ73529.1(9.00E-29)

Mesembryanthemum crystallinum (ELF3)

Unigene95840_CL32

-0.382897069

417

AAQ73529.1(9.00E-13)

Mesembryanthemum crystallinum (ELF3)

Unigene96135_CL32

-0.380647319

422

ACK56113.1(5.00E-37)

Mesembryanthemum crystallinum (ELF3)

Unigene102615_CL32

-0.206409008

596

ACK56113.1(9.00E-34)

Hedyotis terminalis (ELF4-like)

Unigene95599_CL32

0.413259171

413

P92973(1.00E-33)

Hedyotis terminalis (ELF4-like)

Unigene18163_CL32

-3.608786935

661

NP_172424.1(1.00E-12)

Arabidopsis thaliana (CCA1)

Unigene104731_CL32

1.4513943

710

Q6R0H1(2.00E-36)

Arabidopsis thaliana (PIF3)

Unigene108316_CL32

-1.018324637

1436

Q6R0H1(6.00E-31)

Arabidopsis thaliana (LHY)

Continued Table S12

Unigene26904_CL32

-4.390057728

713

Q6R0H1(2.00E-17)

Arabidopsis thaliana (LHY)

Unigene63037_CL32

14.39340669

211

Q6R0H1(6.00E-13)

Arabidopsis thaliana (LHY)

Unigene89188_CL32

4.196688254

334

Q6R0H1(7.00E-07)

Arabidopsis thaliana (LHY)

Unigene80668_CL32

13.94708773

275

Q6R0H1(8.00E-18)

Arabidopsis thaliana (LHY)

Unigene59487_CL32

14.4562944

202

ABD28287.1(3.00E-49)

Arabidopsis thaliana (LHY)

Unigene102557_CL32

-3.610666668

593

ABD28287.1(1.00E-128)

Glycine max (FKF1)

Unigene105147_CL32

-3.118461308

742

ABD28287.1(5.00E-24)

Glycine max (FKF1)

Unigene42124_CL32

-3.434488802

166

ABD28287.1(2.00E-43)

Glycine max (FKF1)

Unigene84845_CL32

-2.960609139

299

ABC25060.2(1.00E-113)

Glycine max (FKF1)

Unigene102816_CL32

-0.204191182

605

ABC25060.2(7.00E-18)

Ipomoea nil (ZTL)

Unigene35130_CL32

-0.311106386

152

ABD28285.1(5.00E-08)

Ipomoea nil (ZTL)

Unigene33278_CL32

-0.311106386

150

AAQ73527.1(2.00E-53)

Glycine max (ZTL)

Unigene92560_CL32

-0.831113445

370

Q9SQI2(2.00E-86)

Mesembryanthemum crystallinum (ZTL)

Unigene100710_CL32

-0.416716574

524

Q9SQI2(6.00E-16)

Arabidopsis thaliana (GI)

Unigene84698_CL32

-0.190812153

298

Q9SQI2(1.00E-44)

Arabidopsis thaliana (GI)

Unigene88112_CL32

-0.311106386

324

Q9SQI2(4.00E-157)

Arabidopsis thaliana (GI)

Unigene107555_CL32

0.694000504

1075

Q9SQI2(9.00E-20)

Arabidopsis thaliana (GI)

Unigene74263_CL32

0.768328081

248

Q9SQI2(1.00E-42)

Arabidopsis thaliana (GI)

Unigene88097_CL32

0.837757

324

Q9SQI2(7.00E-47)

Arabidopsis thaliana (GI)

Unigene88110_CL32

0.139555023

324

Q9AWL7(6.00E-37)

Arabidopsis thaliana (GI)

Unigene85996_CL32

-0.493970443

308

Q9AWL7(2.00E-06)

Oryza sativa subsp. Japonica (GI)

Unigene39271_CL32

0.056625398

160

Q9AWL7(3.00E-22)

Oryza sativa subsp. Japonica (GI)

Unigene85177_CL32

0.688893614

302

Q9AWL7(1.00E-07)

Oryza sativa subsp. Japonica (GI)

Unigene81632_CL32

0.314728396

280

Q38840(8.00E-18)

Oryza sativa subsp. Japonica (GI)

Unigene7518_CL32

11.16188595

517

Q96524(7.00E-65)

Arabidopsis thaliana (AGL17)

Vernalization pathway










Unigene107834_CL32

0.21940833

1179

NP_178674.6(0)

Arabidopsis thaliana (ELF8)

Unigene66322_CL32

0.010821709

221

NP_178674.6(1.00E-06)

Arabidopsis thaliana (ELF8)

Unigene1127_CL32

-0.935597251

293

AAY15746.1(2.00E-49)

Nicotiana benthamiana (VIP2)

Unigene44452_CL32

-1.04807198

171

AAY15746.1(5.00E-15)

Nicotiana benthamiana (VIP2)

Unigene54568_CL32

0.229461995

192

AAY15746.1(4.00E-27)

Nicotiana benthamiana (VIP2)

Unigene559_CL32

-0.673676466

284

AAY15746.1(5.00E-34)

Nicotiana benthamiana (VIP2)

Unigene81012_CL32

-0.540588232

277

AAY15746.1(8.00E-40)

Nicotiana benthamiana (VIP2)

Unigene83421_CL32

-0.159103293

290

AAY15746.1(5.00E-42)

Nicotiana benthamiana (VIP2)

Unigene83853_CL32

-1.522610491

293

NP_568912.2(1.00E-09)

Arabidopsis thaliana (VIP2)

Unigene43995_CL32

-0.249705842

170

NP_001105143.1(3.00E-17)

Zea mays (VIP3)

Unigene61328_CL32

-0.375236724

206

NP_194712.1(5.00E-24)

Arabidopsis thaliana (VIP3)

Unigene86878_CL32

-0.044591412

314

NP_194712.1(6.00E-08)

Arabidopsis thaliana (VIP3)

Unigene101694_CL32

0.195853602

559

Q9FIE3(1.00E-25)

Arabidopsis thaliana (VIN3)

Unigene103924_CL32

0.37286612

663

Q9FIE3(7.00E-20)

Arabidopsis thaliana (VIN3)

Unigene10558_CL32

0.127014726

968

Q9FIE3(1.00E-27)

Arabidopsis thaliana (VIN3)

Unigene105853_CL32

0.391278976

805

Q9FIE3(1.00E-16)

Arabidopsis thaliana (VIN3)

Unigene107250_CL32

0.314498099

1002

Q9FIE3(3.00E-07)

Arabidopsis thaliana (VIN3)
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