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Southern California Bight 2008 Regional Monitoring Survey


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tblToxicityBatchInformation

PURPOSE: This table is used to record information specific to each test batch processed in the laboratory and is used as supporting documentation for the Toxicity Test data. Each record represents specific information common to a group of samples processed at the same time and is pertinent to all replicates processed. This is QA/QC data needed to document the test results.


TABLE GUIDELINES:

  • Each record will be unique based on a combination of the fields QABatch, LabCode and TestDuration.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblToxicityBatchInformation for submission to the Bight’08 online system.

EXAMPLE DATA:


Table Structure:
tblToxicityBatchInformation

Field Name

Type

Required

Size

Description

QABatch

Text

Y

50

The batch code for the sample processing batch.

LabCode

Text

Y

15

The agency code from luList01_AgencyCodes of the processing laboratory.

Species

Text

Y

50

The species code from luList34_ToxicitySpecies.

Protocol

Text

Y

50

The test protocol from luList35_ToxicityProtocols.

TestDate

Date/Time

Y




The starting date of the test expressed as dd-mmm-yyyy.

Matrix

Text

Y

50

The test matrix from luList36_ToxicityMatrices.

TestDuration

Decimal

Y




The duration of the test expressed in days.

TestDurationUnits

Text

Y

15

From luList28_Units (Days or Hours).

Temperature

Decimal

Y




The temperature at which the test was conducted (degrees C).

TemperatureUnits

Text

Y

15

From luList28_Units.

TestAcceptability

Text

Y

50

Evaluation of the test results from luList39_ToxicityTestAcceptabilityCodes.

Comments

Text

N

100

Additional remarks.

****************************************************************************************************


tblToxicityResults


PURPOSE: The Toxicity Results table carries data relevant to sediment or water toxicity tests and their replicates. Each record represents the results of an individual replicate for an individual species processed in a batch of replicates.


TABLE GUIDELINES:

  • Each record will be unique based on a combination of the fields StationID, SampleType, QABatch, LabCode, Species, Dilution, Concentration and LabRep.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblToxicityResults for submission to the Bight’08 online system.

EXAMPLE DATA:


Table Structure:
tblToxicityResults

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from the station table.

SampleDepth

Decimal

N




Depth the sample was taken.

SampleDepthUnits

Text

*

15

Unit the sample depth was measured. From luList28_Units. *Required if SampleDepth present

SampleType

Text

Y

50

Sample type from luList04_SampleTypes.

QABatch

Text

Y

50

Batch number for batch processed samples.

Matrix

Text

Y

50

The test matrix from luList36_ToxicityMatrices.

LabCode

Text

Y

15

The agency code from luList01_AgencyCodes.

Species

Text

Y

50

Test species from luList34_ToxicitySpecies.

Dilution

Decimal

Y




The dilution factor expressed as a proportion. Report as –99 for stations with no dilution factor.

Concentration

Decimal

Y




Concentration in mg/L. Report as –99 for stations with no concentration.

ConcentrationUnits

Text

Y

15

From luList28_Units.

EndPoint

Text

Y

50

The type of end point from luList37_ToxicityEndPoints.

LabRep

Integer

Y




Count.

Value

Decimal

Y




The numerical result of the test.

ValueUnits

Text

Y

15

The units of the value from luList28_Units.

QACode

Text

Y

50

The quality assurance code from luList39_ToxicityTestAcceptabilityCodes.

Comments

Text

N

100

Additional remarks.

****************************************************************************************************

tblToxicityWQ

PURPOSE: This table is used to document water quality during the course of a toxicity test. Each record represents a measurement of an individual water quality parameter at a specific time interval during the course of the test batch.


TABLE GUIDELINES:

  • Each record will be unique based on a combination of the fields StationID, QABatch, Matrix, Dilution, Concentration, TimePoint, Parameter, LabRep, and LabCode.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblToxicityWQ for submission to the Bight’08 online system.

EXAMPLE DATA:


Table Structure:
tblToxicityWQ

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from the station table.

QABatch

Text

Y

50

The batch code for the sample processing batch.

Matrix

Text

Y

50

The test matrix from luList36_ToxicityMatrices.

Dilution

Decimal

Y




The dilution factor expressed as a proportion.

Concentration

Decimal

Y




Concentration expressed in mg/L.

ConcentrationUnits

Text

Y

15

From luList28_Units.

TimePoint

Decimal

Y




The number of days from the start of the test. TimePoints done before the start of the tests can be negative.

Parameter

Text

Y

50

The water quality parameter being measured from luList15_ParameterCodes.

Qualifier

Text

N

10

Any necessary qualifier from luList11_QualifierCodes.

Value

Decimal

Y




The numerical result for the parameter.

ValueUnits

Text

Y

15

Any necessary qualifier from luList28_Units.

LabRep

Integer

Y




The number of the replicate in which the measurement was taken. Report “0” for surrogate chambers.

LabCode

Text

Y

15

From luList01_AgencyCodes.

Comments

Text

N

100

Additional remarks.

****************************************************************************************************


tblToxicitySummaryResults

PURPOSE: This table is used to document the final determination of toxicity for each station. This table has been added to make the results easier to interpret by the final end users of the data set. SCCWRP will generate this table after all other toxicity data has been submitted.


TABLE GUIDELINES:

  • Each record will be unique based on a combination of the fields StationID, Species, and LabCode.

EXAMPLE DATA:


Table Structure:
neED INPUT FROM TOX COMMITTEE

MIGHT WANT TO COMPARE WITH SWAMP
tblToxicitySummaryResults

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from the station table

LabCode

Text

Y

15

From luList01_AgencyCodes.

SampleType

Text

Y

10

Type of sample. Refer to luList04

QABatch

Text

Y

50

Identifier to match samples analyzed as a group

Species

Text

Y

50

Code of species or type of biological system used for the toxicity test; refer to luList34.

Dilution

Decimal

N




The dilution factor expressed as a proportion.. When not required, complete with -99.

Concentration

Decimal

N




Concentration in mg/L. When not required, complete with –99

EPCode

Text

Y

10

The type of endpoint for the test. Refer to luList37

Units

Text

Y

15

The units for the endpoint from luList28_Units.

StatisticalTest

Text

Y

50

The statistical method used to determine toxicity.

Mean

Decimal

Y




The mean value for the test and sample generated from the lab replicates in tblCoreToxicityResults

N

Integer

Y




The number of replicates used to calculate mean and standard deviation from the lab replicates in tblCoreToxicityResults

StdDev

Decimal

Y




The standard deviation for the test and sample generated from the lab replicates in tblToxicityResults

PctControl

Decimal

Y




The mean expressed as a percentage of the mean for the control (i.e., mean of the lab replicates divided by the mean for the control and multiplied by 100)

SigEffect

Text

Y

5

Statistically significant effect based on control response. From luList41_ControlResponses

QACode

Text

Y

10

The quality assurance code for the analysis. Refer to luList39

Comment

Text

N

100

Note comments on statistical test used if known (e.g. ANOVA, t-test, etc.)

****************************************************************************************************


tblTrawlAssemblageEvent


PURPOSE: The purpose of the trawl data table is to document the track of all trawls conducted during the course of the project and the type of samples collected for each trawl. Each record represents a record of an individual trawl track.

There are four positions recorded during a trawl; net over, net on the bottom, end of trawl, and net on deck. The first and last positions are recorded for Quality Assurance purposes. The time is recorded for each of these positions. The latitude and longitude are recorded for all of the positions in terms of decimal degrees.

TABLE GUIDELINES:


  • The combination of StationID, SampleDate, SamplingOrganization, and TrawlNumber ensure that each record in the table will be unique.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblTrawlAssemblageEvent for submission to the Bight’08 online system.

EXAMPLE DATA:

Table Structure:



tblTrawlAssemblageEvent

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from the station table.

SampleDate

Date/Time

Y




The date the sample was collected expressed as dd-mmm-yyyy.

SamplingOrganization

Text

Y

15

From luList01_AgencyCodes.

GearCode

Text

Y

25

From luList03_EquipmentCodes.

TrawlNumber

Integer

Y




The sequence number of the trawl at the station. Default = 1

TrawlLength

Decimal

Y




Trawl distance from start of trawl to end of trawl in meters. (Field Computer computes this value).

Datum

Text

Y

10

The datum on which the latitude and longitude are based (default is NAD83).

OverTime

Date/Time

Y




The time the net was deployed expressed as 24 hour time (hh:mm).

OverTimeZone

Text

Y

10

The time zone of the arrival time. From luList42_TimeZoneCodes.

OverLatitude

Decimal

Y




Decimal Degrees to five places (NAD 83).

OverLongitude

Decimal

Y




Decimal Degrees to five places (NAD 83) expressed as a negative number.

StartTime

Date/Time

Y




The time the net started fishing expressed as 24 hour time (hh:mm).

StartTimeZone

Text

Y

10

The time zone of the arrival time. From luList42_TimeZoneCodes.

StartLatitude

Decimal

Y




Decimal Degrees to five places (NAD 83).

StartLongitude

Decimal

Y




Decimal Degrees to five places (NAD 83) expressed as a negative number.

StartDepth

Decimal

Y




The depth at the start of trawl in meters.

StartDepthUnits

Text

Y

15

From list28 Units.

WireOut

Integer

Y




The length of wire out expressed in meters.

WireOutUnits

Text

Y

15

From luList28_Units.

EndTime

Date/Time

Y




The time the net finish fishing expressed as 24 hour time (hh:mm).

EndTimeZone

Text

Y

10

The time zone of the arrival time. From luList42_TimeZoneCodes.

EndLatitude

Decimal

Y




Decimal Degrees to five places (NAD 83).

EndLongitude

Decimal

Y




Decimal Degrees to five places (NAD 83) expressed as a negative number.

EndDepth

Number

Y




The depth at the end of the trawl in meters.

EndDepthUnits

Text

Y

15

From luList28_Units.

DeckTime

Date/Time

Y




The time the net is recovered and on deck expressed as 24 hour ( hh:mm).

DeckTimeZone

Text

Y

10

The time zone of the arrival time. From luList42_TimeZoneCodes.

DeckLatitude

Decimal

Y




Decimal Degrees to five places (NAD 83).

DeckLongitude

Decimal

Y




Decimal Degrees to five places (NAD 83) expressed as a negative number.

TrawlFailCode

Text

Y

25

From luList40_EventFailCodes. Default = “None”

ArchivalDataTag

Yes/No

Y




Is there Archival data associated with this trawl? Default = “No”

ArchivalTagManufacturer

Text

*

50

Who manufactured the archival data tag. Required if ArchivalDataTag was used.

ArchivalTagNumber

Text

*

50

Tag number listed on tag or generated by user. Required if ArchivalDataTag was used.

DistanceToTarget

Decimal

Y




Distance from target location in meters

DistanceToTargetUnits

Text

Y

15

Default is “m”(meters). From luList_28_Units

Comments

Text

N

100

Additional comments relative to the trawl.

****************************************************************************************************

tblArchivalDataTag


PURPOSE: This table is used to record temperature and depth information specific to each trawl. Each record represents specific information collected at a certain time and depth. This is QA/QC data needed to document actual time a trawl net spends on the bottom of the ocean.

TABLE GUIDELINES:



  • Each record will be unique based on a combination of the fields StationID, SamplingOrganization, TrawlNumber, SampleDate and Time.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblArchiveDataTag for submission to the Bight 08 online system.

EXAMPLE DATA:

Table Structure:



tblArchiveDataTag

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from tblStations.

SamplingOrganization

Text

Y

10

From luList01_AgencyCodes.

TrawlNumber

Integer

Y




The sequential number of the trawl. The field may contain a one if there are no replicates.

SampleDate

Date/Time

Y




The date recorded by the instrument/sensor expressed as dd-mmm-yyyy.

Time

Date/Time

Y




The time recorded by the instrument/sensor expressed as hh:mm:ss (include seconds).

TimeZone

Y

10




The time zone of the arrival time. From luList42_TimeZoneCodes.

Temperature

Number

Y




The temperature recorded by the instrument/sensor.

TemperatureUnit

Text

Y




From luList28_Units.

Depth

Decimal

Y




The pressure/depth recorded by the instrument/sensor.

DepthUnit

Text

Y

15

From luList28_Units (psi, dbar, meters, etc.).

SensorCategory

Text

Y

1

Description of trawl event based on sensor pressure data: S=surface, D=descent, B=bottom, R=Retrieval.

BoatCategory

Text

Y

2

Description of trawl event based on boat/fieldcrew trawl assemblage event table: SB=surface, DB=descent, BB=bottom, RB=Retrieval.

Comments

Text

N

100

Additional comments.

****************************************************************************************************

tblTrawlDebris


PURPOSE: The purpose of the trawl debris table is to document the type and amount of debris encountered during each trawl.

TABLE GUIDELINES:



  • The combination of StationID, SampleDate, TrawlNumber, SamplingOrganization and DebrisType ensures that each record in the table will be unique.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblTrawlDebris for submission to the Bight‘08 online system.

EXAMPLE DATA:

Table Structure:



tblTrawlDebris

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from the station table.

SampleDate

Date/Time

Y




The date the sample was collected expressed as dd-mmm-yyyy.

TrawlNumber

Integer

Y




The number of the trawl from which the sample was collected.

SamplingOrganization

Text

Y

15

From luList01_AgencyCodes

DebrisType

Text

Y

25

Debris type from luList31_TrawlDebrisType. Comment required if “Other”

AbunEstimate

Text

Y

10

Estimated numerical abundance code from luList32_TrawlDebrisAbundanceEstimates.

WtEstimate

Text

Y

10

Estimated weight of debris code from luList33_TrawlDebrisWeightEstimates.

Comments

Text

*

100

Additional remarks. Required if DebrisType = “Other”.

****************************************************************************************************

tblTrawlFishAbundance


PURPOSE: The purpose of the trawl fish abundance table is to document the number of individuals of each species within a size class from a successful trawl. Gross pathology of these fish will be checked and recorded as anomalies. Each record represents the number of fish in a particular size class of a particular species and a particular anomaly state.

Each fish is measured individually and examined for anomalies. In the event that anomalies are found in combination, use the codes for anomaly combinations from luList 22_TrawlFishAnomalyCodes.

TABLE GUIDELINES:


  • The combination of the fields StationID, SampleDate, SamplingOrganization, TrawlNumber, Species, SizeClass, and Anomaly will ensure that each record is unique in the table.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblTrawlFishAbundance for submission to the Bight’08 online system.

EXAMPLE DATA: Although the Trawl Fish Abundance table is simple in structure, the actual application is sometimes confusing, and so an example is included to clarify the use of this table. In this example the collected species was Paralabrax nebulifer. There were five fish in size class 10, one of which has a lesion. There were 2 fish in size class 11, both of which have no anomalies.

Table Structure:



tblTrawlFishAbundance

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from the station table.

SampleID

Text

N

10

The laboratory internal sample identifier.

SampleDate

Date/Time

Y




The date the sample was taken expressed as dd-mmm-yyyy.

SamplingOrganization

Text

Y

15

From luList01_AgencyCodes.

TrawlNumber

Integer

Y




The sequential number of the trawl taken at the station.

Species

Text

Y

50

The species being measured from luList09_SpeciesList.

SizeClass

Integer

Y




The size class into which the fish falls expressed in cm.

AbundanceQualifier

Text

N

10

Any necessary qualifier from luList11_QualifierCodes.

Abundance

Integer

Y




The number of fish in the size class.

Anomaly

Text

Y

20

Any present anomaly or combination of anomalies from luList22_TrawlFishAnomalies.

BodyLocation

Text

N

50

From luList29_FishBodyLocations.

Comments

Text

N

100

Additional remarks.

****************************************************************************************************

tblTrawlFishBiomass


PURPOSE: The purpose of this table is to document the collective weight of each fish species in all size classes collected in the trawl used for assemblage.

The biomass will be recorded to a single decimal place. The “units” field default value is kg and is carried to document the units used in this survey for historical purposes. If a species group weighs less than 0.1 kg it will recorded as < 0.1 kg and be retained and weighed with other species groups that fall into this weight category. A single record will be entered with the species name “CompositeWt” for each station that had at least two species groups weighing less than 0.1 kg. This is essential for computing a total biomass of fish for the trawl.

TABLE GUIDELINES:


  • The combination of the fields StationID, SampleDate, SamplingOrganization, TrawlNumber, and Species will ensure that each record is unique in the table.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblTrawlFishBiomass for submission to the Bight’08 online system.

EXAMPLE DATA:

Table Structure:



tblTrawlFishBiomass

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from tblStations.

SampleID

Text

N

10

The laboratory internal sample identifier.

SampleDate

Date/Time

Y




The date the sample was collected expressed as dd-mmm-yyyy.

SamplingOrganization

Text

Y

15

From luList01_AgencyCodes.

TrawlNumber

Integer

Y




The sequential number of the trawl at that station.

Species

Text

Y

50

The species measured from luList09_SpeciesList.

BiomassQualifier

Text

N

10

Any necessary qualifier from luList11_QualifierCodes.

Biomass

Decimal

Y




The weight of the collected members of the species in kg.

BiomassUnits

Text

Y

15

The units used for the weight, normally KG, from LuList28_Units.

Comments

Text

N

100

Additional comments.

****************************************************************************************************

tblTrawlInvertebrateAbundance


PURPOSE: The trawl invertebrate abundance table is used to document the numerical abundance of megabenthic invertebrates collected in trawls used for assemblage characterization. Each record represents the abundance and occurrence of anomalies in an individual species.

The qualifier field may carry an “A” indicating that the abundance was estimated by aliquot. In the case of certain species like urchins, where very large numbers of individuals may be encountered, a number (100 or 200 for example) may be weighed and the total haul number estimated from the total weight.

TABLE GUIDELINES:


  • The combination of the fields StationID, SampleDate, SamplingOrganization, TrawlNumber, Species, and Anomaly will ensure that each record is unique in the table.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblTrawlInvertebrateAbundance for submission to the Bight’08 online system.

EXAMPLE DATA:

Table Structure:



tblTrawlInvertebrateAbundance

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from tblStations.

SampleID

Text

N

10

The laboratory internal sample identifier.

SampleDate

Date/Time

Y




The date the sample was collected expressed as dd-mmm-yyyy.

SamplingOrganization

Text

Y

15

From luList01_AgencyCodes.

TrawlNumber

Integer

Y




The sequential number of the trawl taken at that station.

Species

Text

Y

50

Scientific names of collected invertebrates from luList09_SpeciesList.

AbundanceQualifier

Text

N

10

A qualifier from luList11_QualifierCodes.

Abundance

Integer

Y




Number of individuals of the species.

Anomaly

Text

Y

30

Anomaly from luList23_InvertebrateAnomalyCodes recorded as None if no anomaly. Default = “None”

Comments

Text

N

100

Additional remarks.

****************************************************************************************************

tblTrawlInvertebrateBiomass


PURPOSE: The purpose of the trawl invertebrate biomass table is to record the collective biomass of each megabenthic invertebrate species collected at a trawl station. Each record represents the collective biomass of an individual species expressed in kilograms.

As with the fish biomass, the biomass of megabenthic invertebrates will be recorded to a single decimal place. The “units” field default value is kg and is carried to document the units used in this survey for historical purposes. If a species group weighs less than 0.1 kg it will recorded as < 0.1 kg and be retained and weighed with other species groups that fall into this weight category. A single record will be entered with the species name “CompositeWt” for each station that had at least two species groups weighing less than 0.1 kg. This is essential for computing a total biomass of megabenthic invertebrates for the trawl.

TABLE GUIDELINES:


  • The combination of the fields StationID, SampleDate, SamplingOrganization, TrawlNumber, and Species will ensure that each record in unique in the table.

  • This file can be named at the discretion of the user; however the excel sheet tab must be named tblTrawlInvertebrateBiomass for submission to the Bight’08 online system.

EXAMPLE DATA:

Table Structure:



tblTrawlInvertebrateBiomass

Field Name

Type

Required

Size

Description

StationID

Text

Y

25

A geographic location label from tblStations.

SampleID

Text

N

10

The laboratory internal sample identifier.

SampleDate

Date/Time

Y




The date the sample was collected expressed as dd-mmm-yyyy.

SamplingOrganization

Text

Y

15

From luList01_AgencyCodes.

TrawlNumber

Integer

Y




The sequential number of the trawl at that station from which assemblage data was collected expressed as dd-mmm-yyyy.

Species

Text

Y

50

The species being measured from luList09_SpeciesList.

BiomassQualifier

Text

N

10

Any necessary qualifier code from luList11_QualifierCodes. Default = “None”

Biomass

Decimal

Y




The weight of the collected individual species expressed in KG to 1 decimal places

BiomassUnits

Text

Y

15

Normally KG from luList28_Units.

Comments

Text

N

100

Additional comments.


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