Skeletons of Terrestrial Cetaceans and the Relationship of Whales to Artiodactyls Supplementary Information
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| PART V. Apomorphy List for Cetartiodactyla and Artiodactyla Nodes (ACCTRAN and DELTRAN Optimization)
List of characters supporting Cetartiodactyla and Artiodactyla with the number of most parsimonious trees in which the character is transformed at that node. CETARTIODACTYLA NODE ACCTRAN DELTRAN Character Transformation Number of Trees Number of Trees C.I. 1 (01) 38 -- 0.333 6 (01) 10 24 0.167 21 (01) 38 38 0.250 34 (01) 38 19 0.333 38 (10) 14 -- 0.167 40 (01) 14 38 0.250 41 (01) 14 38 0.500 46 (10) 38 38 0.500 51 (01) 14 38 0.500 62 (01) 14 38 0.333 65 (01) 14 38 0.250 66 (01) 14 29 0.250 70 (01) 14 38 0.500 76 (01) -- 10 0.250 77 (01) 14 38 1.000 82 (01) 14 38 0.500 91 (01) 14 38 0.500 94 (01) -- 38 1.000 96 (01) 14 38 1.000 98 (01) 14 38 1.000 99 (01) 14 38 1.000 101 (01) 14 38 1.000
ACCTRAN DELTRAN Character Transformation Number of Trees Number of Trees C.I. 1 (01) -- 38 0.333 7 (10) 28 -- 0.500 8 (10) 38 38 0.500 9 (10) 38 38 0.250 10 (01) 38 38 0.333 25 (10) 38 38 0.500 26 (10) 38 38 0.250 27 (10) 14 -- 0.500 32 (01) 38 -- 1.000 48 (10) 38 36 0.250 64 (01) -- 38 0.333 73 (01) 38 -- 0.500 85 (10) 38 38 0.250 PART VI. Bootstrap Analysis Bootstrap method with heuristic search: Number of bootstrap replicates = 100 Starting seed = 1288538431 Optimality criterion = maximum parsimony Character-status summary: 10 characters are excluded Of the remaining 95 included characters: 8 characters are of type 'ord' (Wagner) 87 characters are of type 'unord' All characters have equal weight All characters are parsimony-informative Starting tree(s) obtained via stepwise addition Addition sequence: simple (reference taxon = Arctocyon) Number of trees held at each step during stepwise addition = 1 Branch-swapping algorithm: tree-bisection-reconnection (TBR) Steepest descent option not in effect Initial 'MaxTrees' setting = 14400 (will be auto-increased by 100) Branches collapsed (creating polytomies) if maximum branch length is zero 'MulTrees' option in effect Topological constraints not enforced Trees are unrooted
Time used = 02:21:01.0 Bootstrap 50% majority-rule consensus tree (plus other groups compatible with this tree) /--------------------------------------------------------------------- Arctocyon(1) | | /----------- Hyopsodus(2) | | | /-------------------------69-------------------------+ /----- Phenacodus(3) | | \-79--+ | | \----- Meniscotherium(4) | | | | /------------------------------------------------ Andrewsarchus(5) | | | | | | /----- Pakicetus(15) | | | /-----------------99-----------------+ | | | | \----- Ambulocetus(16) | | | | | | /-26-+ | /---------------- D pakistanensis(17) | | | | | | | | | | | | /----- Haplobunodontid(27) | | | | | /-------9-------+ /-27--+ | | | | | | | | \----- Cebochoerid(28) | | | | | | \-11-+ \----+ | \-77--+ | \----------- Raoellid(29) | | | /-12-+ | | | | | /--------------------------- D secans(18) | | | | | | | | | | | | /--------------------- Archaeotherium(19) | | | | \-25-+ | | | | | | | /---------------- Elomeryx(20) | /-23-+ | | \-32--+ | | | | | | | | /----- Hippopotamus(21) | | | \-48-+ \-47-+ /-62--+ | | | | | | \----- Hexaprotodon(22) | | | | \-56-+ | | | | \----------- Sus(23) | | | | | | | | /----------- Agriochoerus(24) | | | | | \-59--+ | \-----------59------------+ /----- Poebrotherium(25) | | \-34--+ | | \----- Tragulus(26) | | | \----------------------------------------------------- Eoconodon(6) | | /-------------------------------- Hapalodectes(7) | | | | /----- Dissacus(8) \-----------68------------+ /---------34----------+ | | \----- Sinonyx(10) | | \-20-+ /--------------------- Ankalagon(9) | | | | /----------- Pachyaena(11) \-22--+ | | /-36-+ /----- Mesonyx(12) | | \-51--+ \-27-+ \----- Harpagolestes(14) | \---------------- Synoplotherium(13) Bipartitions found in one or more trees and frequency of occurrence (bootstrap support values):
12345678901234567890123456789 Freq --------------------------------------- ..............**............. 99.00 ..**......................... 78.55 ..............*************** 76.91 .***......................... 69.27 ......********............... 68.27 ....................**....... 61.64 ....************************* 59.34 .......................***... 59.19 ....................***...... 56.40 ...........*.*............... 51.38 ................************* 48.00 ...................****...... 46.66 ..........**.*............... 35.72 ........................**... 34.12 .......................*.*... 34.06 .......*.*................... 33.85 ..................*****...... 32.39 ..........................**. 27.04 ..........****............... 27.01 ....*.........*************** 26.39 .................******...... 25.18 ....**........*************** 23.32 ....*.*********************** 22.46 ........*.****............... 21.91 .......*******............... 20.37 ......*********************** 19.62 .**.......................... 19.61 ......******.*............... 19.20 .....*........*************** 17.90 ..............**............* 17.28 ..........*..*............... 17.25 .......................**.... 16.51 ....*.********............... 16.44 ..*************************** 15.49 ...................*..*...... 14.66 ..........................*.* 14.60 ...................*...***... 14.20 .***.*........*************** 13.96 ..................*.....*.... 12.71 ................**........... 12.39 .....................**...... 11.87 .....************************ 11.82 ................*******...*** 11.69 ......**.*................... 11.46 .................**.......... 11.26 ..........................*** 10.95 ................*.........**. 10.92 .................**.***...... 10.58 ......**..................... 10.52 .................************ 9.88 .***.************************ 9.77 ....................*.*...... 9.33 ..............**************. 9.09 .......................****.. 8.96 ......****................... 8.88 .......***................... 8.72 ................*.........*.. 8.71 ..................*.....**... 8.71 ................*.........*** 8.68 .....*********............... 8.64 ...........***............... 8.56 ......***.****............... 8.50 .......**.................... 8.48 ......***.*..*............... 8.28 ..................*....***... 8.22 ......***.................... 8.18 ..................*.***...... 8.08 .***..........*************** 8.08 ....**********............... 7.93 .***.*....................... 7.68 ................************. 7.68 ...................****....*. 7.67 ..............*****....****** 7.50 ......*.*.................... 7.41 .........*.*................. 7.40 .......................*****. 7.12 ......*****.................. 7.10 ..............****.....****** 6.94 ..............***............ 6.68 ..............******..******* 6.60 ...................*.**...... 6.50 ..............*******.******* 6.50 .*****........*************** 6.47 ..............**.......***... 6.41 .......................*.**.. 6.36 ................*.........*.* 6.31 ........*.*..*............... 6.30 ........*.*.................. 6.29 ........******............... 6.15 ......*****..*............... 6.10 ......*****.**............... 6.09 ......***.**.*............... 6.07 ..................*.........* 6.02 ..............***..*...****** 6.00 ........*.**.*............... 5.99 ..........*.*................ 5.76 ......*.*.****............... 5.71 ...........**................ 5.69 ......*.......*************** 5.57 ..............******...****** 5.50 ........**................... 5.46 .........*....**............. 5.31 ................*......*****. 5.25 ...................*....*.... 5.25 ......*...*.................. 5.18 ......***.*.................. 5.18 .....*..........************* 5.08 ......**********............. 5.00 ..............*****....***..* 5.00 ..............*****....****.* 5.00 782 groups at (relative) frequency less than 5% not shown REFERENCES Cifelli, R.L. 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