S-
Mummenhoff et al.
Mummenhoff, Klaus, Holger Brüggemann, and John L. Bowman. 2001. Chloroplast DNA phylogeny and biogeography of Lepidium (Brassicaceae). Am. J. Bot. 88: 2051-2063.
Appendix. Origin of Lepidium species in study.
Taxon / sort of material analyzed a
|
|
Provenance / source b
|
GenBank accession number c
|
|
|
|
trnT/trnL spacer d
|
trnL intron
|
trnL/trnF spacer e
|
|
|
|
|
|
|
Cardaria draba (L.) Desv. ssp.
chalepensis (L.) O.E. Schulz
|
F
|
Iran, Karadj / ETSIA, 168-3706-75
|
AY015695
AY015696
|
AY015832
|
AY015918
|
C. draba (L.) Desv. ssp. draba
|
F
|
Turkey, Bornova Izmir / B.G. Izmir, Turkey
|
|
AY015830
|
AY015919
|
C. pubescens (C.A. Mey.)
Jarmolenko
|
H
|
USA, Wyoming / MO, 4005756
|
AY015697
AY015698
|
AY015831
|
AY015920
|
Lepidium africanum (Burm.f.) DC.
|
H
|
Südafrika, Cape Province / PRE, South Africa, 95056-102
|
AY015703
AY015704
|
AY015833
|
AY015921
|
L. alluaudii Maire
|
F
|
Morocco, near Tazenakh / ETSIA, 418-1483-68
|
AY015705
AY015706
|
AY015834
|
AY015922
|
L. apetalum Willd.
|
F
|
China, Peking / B.G. Peking, China
|
AY015823
|
AY015835
|
AY015923
|
L. arbuscula Hillebr.
|
F
|
Hawaii, Oahu / National Tropical B.G. Lawai, Hawaii, 945176
|
AY015707
AY015708
|
AY015836
|
AY015924
|
L. armoracia Fisch. et Mey.
|
H
|
Arabian Republic Yemen, Shibam / K, MWC 2307
|
AY015709
AY015710
|
AY015837
|
AY015925
|
L. aschersonii Thell.
|
F
|
Australia, Victoria / La Trobe Univ., Australia
|
AY015711
AY015712
|
AY015838
|
AY015926
|
L. aucheri Boiss.
|
H
|
Jordania, Wadi Araba / Orient Herbarium, FU Berlin, Germany
|
AY015713
AY015714
|
AY015839
|
AY015927
|
|
|
|
|
|
|
Appendix. Continued
Taxon / sort of material analyzed a
|
|
Provenance / source b
|
GenBank accession number c
|
|
|
|
trnT/trnL spacer d
|
trnL intron
|
trnL/trnF spacer e
|
|
|
|
|
|
|
L. austrinum Small
|
H
|
USA, Texas / DAV, 17451
|
AY015715
AY015716
|
AY015840
|
AY015928
|
L. banksii Kirk
|
F
|
New Zealand, / Dept. Conserv., Auckland Conservancy, New Zealand, AUCK 950769
|
AY015717
AY015718
|
AY015841
|
AY015929
|
L. bidentatum Montin
|
F
|
Hawaii, Kauaii / National Tropical B.G. Lawai, Hawaii, 905054
|
AY015719
AY015720
|
AY015842
|
AY015930
|
L. bipinnatifidum Desv.
|
F
|
Bolivia, La Paz / Univ. Osnabrück, Germany
|
AY015721
AY015722
|
AY015843
|
AY015931
|
L. bonariense L.
|
H
|
Chile, Prov. Atacama / CETYBO, 3078
|
AY015723
AY015724
|
AY015844
|
AY015932
|
L. campestre (L.) R. Br.
|
F
|
France, Meurthe-et-Moselle / B.G. Nancy, France
|
AY015725
AY015726
|
AY015845
|
AY015906
AY015907
|
L. capense Thunb.
|
H
|
South Africa, Cape Province / PRE, South Africa, 95056-49
|
AY015727
AY015728
|
AY015846
|
AY015933
|
L. desertorum Eckl. & Zeyh.
|
H
|
South Africa, Cape Province / PRE, South Africa, 95056-68
|
AY015729
AY015730
|
AY015847
|
AY015934
|
L. desvauxii Thell.
|
F
|
Australia, Victoria / La Trobe Univ., Australien
|
AY015731
AY015732
|
AY015848
|
AY015935
|
L. dictyotum A. Gray
|
H
|
USA, California / DAV, 32057
|
AY015733
AY015734
|
AY015849
|
AY015936
|
|
|
|
|
|
|
Appendix. Continued
Taxon / sort of material analyzed a
|
|
Provenance / source b
|
GenBank accession number c
|
|
|
|
trnT/trnL spacer d
|
trnL intron
|
trnL/trnF spacer e
|
|
|
|
|
|
|
L. echinatum Hewson
|
H
|
Australia / Bentley Delivery Centre, Australia
|
AY015735
AY015736
|
AY015850
|
AY015937
|
L. ferganense Korsh.
|
F
|
cultivated / B.G. Moscow, Russia
|
AY015737
AY015738
|
AY015851
|
AY015938
|
L. flavum Torr.
|
H
|
USA, Nevada / MO
|
AY015739
AY015740
|
AY015852
|
AY015908
AY015909
|
L. flexicaule Kirk
|
F
|
New Zealand, Open Bay / Garnock-Jones, New Zealand
|
AY015741
AY015742
|
AY015853
|
AY015939
|
L. fremontii S. Wats.
|
F
|
USA, Mohave Desert / Univ. Osnabrück, Germany
|
AY015815
|
AY015854
|
AY015940
|
L. heterophyllum (DC.) Benth.
|
F
|
Germany, Lauferbacherhof/Ahr / Univ. Osnabrück, Germany
|
AY015816
|
AY015855
|
AY015941
|
L. hirtum (L.) Sm. ssp.
calycotrichum (Kunze) Thell.
|
F
|
Spain, North Almeria / ETSIA, 427-0926-66
|
AY015817
|
AY015856
|
AY015942
|
L. hirtum (L.) Sm. ssp. dhayense
(Manby) Thell.
|
F
|
Morocco, near Oukaimeden / ETSIA, 428-2178-72
|
AY015818
|
AY015857
|
AY015943
|
L. hirtum (L.) Sm. ssp. hirtum (L.)
Sm.
|
F
|
France, Aude / B.G. Univ. Liege, Belgium, 85-3863
|
AY015819
|
AY015858
|
AY015944
|
L. hirtum (L.) Sm. ssp. nebrodense
(Rafin) Thellung
|
F
|
Italy, Sizilia / ETSIA, 429-6201-83
|
AY015820
|
AY015859
|
AY015945
|
|
|
|
|
|
|
Appendix. Continued
Taxon / sort of material analyzed a
|
|
Provenance / source b
|
GenBank accession number c
|
|
|
|
trnT/trnL spacer d
|
trnL intron
|
trnL/trnF spacer e
|
|
|
|
|
|
|
L. hirtum (L.) Sm. ssp. petrophilum
(Cosson) Thell.
|
F
|
Spain, Sierra Nevada / B.G. Marburg, Germany, 83-80
|
AY015821
|
AY015860
|
AY015946
|
L. hyssopifolium Desv.
|
F
|
Australia, Victoria / La Trobe Univ., Australia, 70-296-940
|
AY015743
AY015744
|
AY015861
|
AY015947
|
L. lasiocarpum Nutt.
|
F
|
USA, California / ETSIA, 430-1738-69
|
AY015745
AY015746
|
AY015862
|
AY015948
|
L. latifolium L.
|
F
|
Germany, Leipzig / B.G. Leipzig, Germany
|
AY015747
AY015748
|
AY015863
|
AY015949
|
L. latipes Hook.
|
H
|
USA, California / DAV, 37209
|
AY015749
AY015750
|
AY015864
|
AY015950
|
L. leptopetalum F. Muell.
|
F
|
Australia, Viktoria / La Trobe Univ., Australia
|
AY015751
AY015752
|
AY015865
|
AY015951
|
L. linifolium (Desv.) Steud.
|
F
|
Australien, Carnavon / Kings Park & B.G., Perth, Australia
|
AY015753
AY015754
|
AY015866
|
AY015952
|
L. lyratum L.
|
F
|
Iran, Mountains near Abadeh / ETSIA, 433-3758-75
|
AY015755
AY015756
|
AY015867
|
AY015953
|
L. meyenii Walpers
|
F
|
Peru, Dpto. Junin / Intern. Potato Center, Quito, Ecuador, JTA-106
|
AY015757
AY015758
|
AY015868
|
AY015954
|
L. montanum Nutt.
|
F
|
USA, Arizona / B.G. Univ. Liege, Belgium
|
AY015759
AY015760
|
AY015869
|
AY015955
|
|
|
|
|
|
|
Appendix. Continued
Taxon / sort of material analyzed a
|
|
Provenance / source b
|
GenBank accession number c
|
|
|
|
trnT/trnL spacer d
|
trnL intron
|
trnL/trnF spacer e
|
|
|
|
|
|
|
L. muelleri-ferdinandi Thell.
|
F
|
Australia, New South Wales / La Trobe Univ., Australia
|
AY015761
AY015762
|
AY015870
|
AY015956
|
L. myriocarpum Sond.
|
H
|
South Africa, Cape Province / PRE, South Africa, 95056-53
|
AY015763
AY015764
|
AY015871
|
AY015957
|
L. naufragorum Garnock-Jones
& D.A. Norton
|
F
|
Cultivated / Dept. Conserv., Auckland Conservancy, New Zealand, AUCK 950771
|
AY015765
AY015766
|
AY015872
|
AY015958
|
L. nitidum Nutt.
|
F
|
USA, California / Univ. Osnabrück, Germany
|
AY015767
AY015768
|
AY015873
|
AY015959
|
L. oblongum Small
|
F
|
Cultivated / B.G. Copenhagen, Denmark
|
AY015769
AY015770
|
AY015874
|
AY015960
|
L. oleraceum Sparrm.
|
F
|
New Zealand, Port Waikato / Dept. Conserv., Auckland Conservancy, New Zealand AUCK 941265
|
AY015771
AY015772
|
AY015875
|
AY015961
|
L. oxycarpum Torrey & A.Gray
|
H
|
USA, California / DAV, 115743
|
AY015773
AY015774
|
AY015876
|
AY015962
|
L. oxytrichum Sprague
|
F
|
Australia, Northern Territorium / National B.G. Canberra, Australia
|
AY015775
AY015776
|
AY015877
|
AY015963
|
L. papillosum F. Muell.
|
F
|
Australia, Victoria / T.H. Browne, Australia
|
AY015777
AY015778
|
AY015878
|
AY015964
|
L. pedicellosum F. Muell.
|
H
|
Australia / PERTH, Australia, PRP 641
|
AY015779
AY015780
|
AY015879
|
AY015965
|
|
|
|
|
|
|
Appendix. Continued
Taxon / sort of material analyzed a x
|
|
Provenance / source b
|
GenBank accession number c
|
|
|
|
trnT/trnL spacer d
|
trnL intron
|
trnL/trnF spacer e
|
|
|
|
|
|
|
L. perfoliatum L.
|
F
|
-- / B.G. Vácrátót, Hungary
|
AY015781
AY015782
|
AY015880
|
AY015910
AY015911
|
L. phlebopetalum (F. Muell.)
F. Muell.
|
F
|
Australia / Kings Park & B.G., Perth, Australia, S 446-93
|
AY015783
AY015784
|
AY015881
|
AY015966
|
L. pholidogynum F. Muell.
|
H
|
Australia / PERTH, Australia, PRP 640
|
AY015785
AY015786
|
AY015882
|
AY015967
|
L. pinnatifidum Ledeb.
|
H
|
USA, California / DAV, 96441
|
AY015787
AY015788
|
AY015883
|
AY015968
|
L. pinnatum Thunb.
|
H
|
South Africa, Cape Province / PRE, South Africa, 95056-45
|
AY015827
|
AY015884
|
AY015969
|
L. pseudo-hyssopifoliumHewson
|
F
|
Australia, Victoria / La Trobe Univ., Australia
|
AY015789
AY015790
|
AY015885
|
AY015970
|
L. pseudo-papillosum Thell.
|
F
|
Australia, Victoria / La Trobe Univ., Australia
|
AY015791
AY015792
|
AY015886
|
AY015971
|
L. pseudo-tasmanicum Thell.
|
F
|
Australia, Victoria / La Trobe Univ., Australia
|
AY015826
|
AY015887
|
AY015972
|
L. quitense Turcz.
|
H
|
Ecuador, Prov. Tungurakua / MO
|
AY015793
AY015794
|
AY015888
|
AY015973
|
L. rigidum Pomel
|
H
|
Algerien, Teniet-el-Haad / F. Hellwig, Göttingen, Germany
|
AY015828
|
AY015889
|
AY015974
|
|
|
|
|
|
|
Appendix. Continued
Taxon / sort of material analyzed a
|
|
Provenance / source b
|
GenBank accession number c
|
|
|
|
trnT/trnL spacer d
|
trnL intron
|
trnL/trnF spacer e
|
|
|
|
|
|
|
L. ruderale L.
|
F
|
Germany, Oldenburg / B.G. Oldenburg, Germany
|
AY015795
AY015796
|
AY015890
|
AY015975
|
L. sativum L.
|
F
|
Denmark, Jersie / B.G. Copenhagen, Denmark
|
AY015828
|
AY015891
|
AY015912
AY015913
|
L. schinzii Thell.
|
H
|
South Africa, Orange Free State / PRE, South Africa, 95056-6
|
AY015797
AY015798
|
AY015892
|
AY015976
|
L. serra H. Mann
|
F
|
Hawaii, Kauai / National Tropical B.G. Lawai, Hawaii, 915398
|
AY015799
AY015800
|
AY015893
|
AY015977
|
L. sisymbrioides Hook. f. ssp.
kawarau (Petrie) Thell.
|
F
|
New Zealand, Central Otago / Dept. Conserv., Auckland Conservancy, New Zealand AUCK 950766
|
AY015801
AY015802
|
AY015894
|
AY015978
|
L. sisymbrioides Hook. f. ssp.
matau (Petrie) Thell.
|
F
|
New Zealand, Central Otago / Dept. Conserv., Auckland Conservancy, New Zealand AUCK 950767
|
AY015803
AY015804
|
AY015895
|
AY015979
|
L. sisymbrioides Hook. f. ssp.
sisymbrioides
|
F
|
New Zealand, Central Otago / Dept. Conserv., Auckland Conservancy, New Zealand AUCK 950768
|
AY015805
AY015806
|
AY015896
|
AY015980
|
L. spinescens DC.
|
F
|
Israel, Upper Galilee / B.G. Univ. Tel Aviv, Israel
|
AY015807
AY015808
|
AY015897
|
AY015981
|
L. spinosum Ard.
|
F
|
Turkey, Central-Anatolia / ETSIA, 436-6229-83
|
AY015824
|
AY015898
|
AY015914
AY015915
|
L. tenuicaule Kirk
|
F
|
New Zealand, Kakanui / Dept. Conserv., Auckland Conservancy, New Zealand AUCK 950191
|
AY015809
AY015810
|
AY015899
|
AY015982
|
|
|
|
|
|
|
APPENDIX. Continued
Taxon / sort of material analyzed a
|
|
Provenance / source b
|
GenBank accession number c
|
|
|
|
trnT/trnL spacer d
|
trnL intron
|
trnL/trnF spacer e
|
|
|
|
|
|
|
L. trifurcum (Sond.) Marais
|
H
|
South Africa, Cape Province / PRE, South Africa, 95056-111
|
AY015811
AY015812
|
AY015900
|
AY015983
|
L. villarsii Gren. & Godron ssp.
reverchonii (Deb.) Breist.
|
F
|
Spain, Guadalajara / Ministerio de Agricultura Pesca y Alimentacion, Spain, 7015-86
|
AY015825
|
AY015901
|
AY015916
AY015917
|
L. virginicum L.
|
F
|
Mexico, Carrizal Chico / Univ. Osnabrück, Germany
|
AY015813
AY015814
|
AY015902
|
AY015984
|
OUTGROUP
|
|
|
|
|
|
Hornungia petraea (L.)
Reichenbach
|
F
|
Italy, Alto Adige / Univ. Osnabrück, Germany
|
AY015699
AY015700
|
AY015905
|
AY015985
|
Hymenolobus procumbens (L.)
Nuttall
|
F
|
Spain, Mallorca / B.G. Copenhagen, Denmark
|
AY015701
AY015702
|
AY015903
|
AY015986
|
Pritzelago alpina (L.) Kuntze
|
F
|
Italy, Veneto / Univ. Osnabrück, Germany
|
AY015822
|
AY015904
|
AY015987
|
|
|
|
|
|
|
a F = fresh material, H = Herbarium material.
b ETSIA = Escuela Tecnica Superior de Ingenieros Agronomos, Madrid, Spain; B.G. = Botanical Garden; CETYBO = Centro de Estudios Farmacologicos y Botanicos, Buenos
Aires, Argentina; DAV = Davis Herbarium, Deptartment of Botany, University of California, Davis, USA; K = Kew Herbarium, Royal Botanic Gardens, Kew, UK; MO =
Herbarium, Missouri Botanical Garden, St. Louis, USA; PRE = National Herbarium, Botanical Research Institute, Pretoria, South Africa.
d Species with two GenBank accession numbers refer to sequences starting from the 5´ and 3´ end, respectively. In these species presence of poly-A/T tracts caused premature
termination of sequencing reactions. The sequence of the L/F spacer of Cardaria draba ssp. draba could not be achieved due to sequencing problems in poly A/T stretches.
e Species with two GenBank accession numbers refer to sequences starting from the 5´ and 3´ end, respectively. For these six species overlapping sequencing could not be
achieved due to extreme length of spacer regions. |