Lolium (perrenial ryegrass)
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|  Yüklə 294 Kb.
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5’gcagcaagtcagggaaaaa |
5' match |
5' 19 of 20 match |
5' match |
5' match |
5' match |
no match | |
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3’ ctttttgggagatggtggaa |
3' match |
3' match |
3' 19 of 20 match |
3' match |
3' match |
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rps3† CDS |
5’gggtcgtctagcaggaaaag |
5' match |
5' match |
no match |
no match |
5' no match |
no match |
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3’ cgaattgtttggaggggtag |
3' match |
3' match |
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3' last 17 match (3' to 5') |
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rps8† CDS |
5’gacctggcttacgaatttatgc |
5' match |
5' match |
5' 19 of 20 match |
5' 19 of 20 match |
5' 19 of 20 match |
no match |
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3’ cccccaattctgtttagtcg |
3' match |
3' match |
3' match 1st 17 |
3' match |
3' match |
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rps11† CDS |
5’tacagtgggtttgcaacgag |
5' match |
5' match |
5' 19 of 20 match |
5' 19 of 20 match |
5' 19 of 20 match |
no hits at all |
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3’ gcggcataggtgttacatcg |
3' match |
3' match |
3' last 19 of 20 match (3' to 5') |
3' match |
3' match |
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rps14† CDS |
5’ctagaacaacgtgggccatt |
no match |
no match |
no match |
no match |
no match |
no hits at all |
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3’ tatcgggtttcagagctatcaat |
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rps15† CDS |
5’ cggagacttgcttcacattt |
5' match |
5' match |
5' match |
5' match |
5' match |
no match |
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3’ cgtttgctggcttatttgg |
3' match |
3' match |
3' match |
3' match |
3' match |
3' 1st 10 | |
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rps16† CDS |
5’ctgccgaggcaatcatattt |
5' match |
5' match |
5' 19 of 20 match |
5' 15 of 16 match |
5' 19 of 20 match |
no match |
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3’ cgtcgtggtggaaaaatatg |
3' match |
3' match |
3' match |
3' match |
3' match |
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rps18† CDS |
5’ aggcaatttcaataattactggtc |
5' match |
5' match |
no match |
no match |
no match |
no match |
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3’ cacaaaagttcaattccaatcg |
3' match |
3' match |
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3' 19 of 20 match |
3' 1st 19 of 20 (3' to 5') |
3' 1st 13(3' to 5')match | |
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NAPD-ME GenBank: J05130 |
5’ ctcccgtctaccgcaactac |
5' no hit |
5' no hits |
no match |
no match |
no match |
no match |
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3’ cctctccagcagcacca |
3' 1st 10 match |
3' 1st 10 (3' to 5') |
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NAPD-MDH GenBank: AY105634 |
5’ tcacctgctgttcaaactcg |
ho hits |
no hits |
no hits at all |
no hits |
no hits found |
no match |
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3’ ggatacagcgagtcctccag |
5' match |
5' match |
5' match |
5' match |
5' match |
5' match | |
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4.5S GenBank: NC_001666 rRNA |
5’ ggtgtcaagtggaagtgcag |
3' match |
3' match |
3' match |
3' match |
3' match |
No 3' match |
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(optimal primer set) |
3’ caaatcgttcgttcgttagg |
3' match |
3' match |
3' match |
3' match |
3' match |
No 3' match |
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16S GenBank: NC_001666 rRNA |
5’ cgcaaccctcgtgtttagtt |
5' match |
5' match |
5' match |
5' match |
5' match |
5' match |
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3’ cccattgtagcacgtgtgtc |
3' match |
3' match |
3' match |
3'match |
3' match |
3' 19of 20 match | |
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23S GenBank : NC_001666 rRNA |
5’ cggggagttgaaaataagca |
5' match |
5' match |
5' match |
5' match |
5' match |
5' match |
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3’ gatgtttcagttcgccaggt |
3' match |
3' match |
3' match |
3'match |
3' match |
3' match | |
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The gene names need to line up consistently. Maybe left justification would be best for this column |
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