Lolium (perrenial ryegrass)

səhifə	1/3
tarix	24.06.2016
ölçüsü	294 Kb.

1 2 3

Common Name	Maize	Sugarcane	Sorghum	Lolium (perrenial ryegrass)	Barley	Wheat	Arabidopsis (thale cress)
Taxonomy	Liliopsida; commelinids; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Zea mays	Liliopsida; commelinids; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Saccharum officinarum	Liliopsida; commelinids; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Sorghum	Liliopsida; commelinids; Poales; Poaceae; BEP clade; Pooideae; Poeae; Lolium perenne	Liliopsida; commelinids; Poales; Poaceae; BEP clade; Pooideae; Triticeae; Hordeum vulgare	Liliopsida; commelinids; Poales; Poaceae; BEP clade; Pooideae; Triticeae; Triticum aestivum	Magnoliophyta….Arabidopsis thaliana
gene name
atpA ^†CDS	5’ acccatcgcccattaataca	5' match	5' match	5' match	5' match	5' match	no match
atpA ^†CDS	3’ aatttgcagaagggacgaga	3' match	3' match	no match	no match	no match
atpB† CDS	5’ gggttgatgagaggaatgga	5' match	5' match	5' match	5' match	5' match	no match
atpB† CDS	3’ cgttaaaaattcgtccgaga	3' match	3' match	3' 19 of 20 match	3' 19 of 20 match	no match
atpE† CDS	5’ cggttctgtggagtggtttt	5' match	5' match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	no match
atpE† CDS	3’ gcctgttgagcttcttctgg	3' match	3' match	3' last 16 of 17 match	3' last 16 of 17 match	no match
atpF† CDS	5’ctgggagtttcgggcttaat	5' match	5' match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	5' match (19 of 20)
atpF† CDS	3’ aactcgcacacactcccttt	3' match	3' match	3' match	3' match	3' match	3' no match
atpH† CDS	5’cagaagcagaaggtaaaataagagg	5' match	5' match	5' 24 of 25 match	5' 24 of 25 match	5' 24 of 25 match	no match
atpH† CDS	3’ tgccacaaccagtccataaa	3' match	3' match	no match	no match	no match
atpI† CDS	5’ccaaccccaatccttttacc	5' match	5' match	5' 19 of 20 match	5' match	5' 19 of 20 match	5' match (19 of 20)
atpI† CDS	3’ cgactaattcatccgccaat	3' match	3' match	3' match	3' match	3' match	no match
cemA† CDS	5’ gaataccaggcaatccgaaa	5' match	5' match	5' 19 of 20 match	5' match	5 match	no match
cemA† CDS	3’ catgtgtcttcggtttctcttt	3' match	3' match	no match	no match	no match
clpP*† CDS	5’tcgttgcgagatcacaaatc	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	no hits at all
clpP*† CDS	3’ tgtcaccgtttgcatcgtat	3' match	3' match	3' match	3' match	3' match
infA† CDS	5’cccgagagaagcaaaagtca	5' match	5' 18 match	5' match	5' 1st 18 match	5' 1st 18 match	no match
infA† CDS	3’ ggtgtcattctctaggcgaac	3' match	3' 19 match	3' 16 of 17 match	3' 19 of 20 match	3' 19 of 20 match
matK*† CDS	5’tgcttcgattttctggggta	5' match	5' match	no match	5' 1st 16 of 17 match	5' 19 of 20 match	no match
matK*† CDS	3’ ttgcaaggactgtggtatcg	3' last 18 of 20 match (3' to 5')	3' 19 of 20 match		no match	no match
ndhA† CDS	5’tggtcttctcatggcaggat	5' match	5' match	no match	no match	no match	no hits at all
ndhA† CDS	3’ ttgctagtacacaaaaagttaatggt	3' match	3' match	3' 24 of 25 match	3' 24 of 25	3' 24 of 25
ndhB† CDS	5’atcgggacttttcggagatt	5' match	5' match	5' match	5' match	no match	no match
ndhB† CDS	3’ ccatggaagagaagcaaatga	3' 20 of 21 match	3' 20 of 21 match	3' 20 of 21 match	3' 20 of 21 match	3' 20 of 21	3' 19 of 20 match
ndhC† CDS	5’ggacttttagccccggttag	5' match	5' match	5' last 16 of 20 match	5' last 16 of 20 match	5' match	no match
ndhC† CDS	3’ gtattcggaattgtaaccaagc	3' match	3' match	3' 20 of 21 match	3' 20 of 21 match	3' 20 of 21 match	3' 1st 14 (5' to 3')
ndhD† CDS	5’ggaattgttaccgcatgctc	5' match	5' match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	no hits at all
ndhD† CDS	3’ cccatgtgagatacggagga	3' match	3' match	no match	3' 19 of 20 match	3' 19 of 20 match
ndhE† CDS	5’gatcacaagccgaaacatgg	5' match	5' match	5' match	5' match	5' match	no match
ndhE† CDS	3’ aaaaattgcgaaaatgtctcc	3' match	3' match	3' match	no match	3' 20 of 21 match
ndhF† CDS	5’tggagtttcgggatttgttc	5' match	5' match	5' last 16 of 17 (5' 3')	5' last 16 of 17 (5' 3')	no match	no match
ndhF† CDS	3’ cgtgaagaggaaattgtgcag	3' match	3' match	3' 10 of last 11, 1 from 3'	3' 10 of last 11, 1 from 3'
ndhG† CDS	5’atttgggggatttggtcttc	5' 19 of 20 match	5' 19 0f 20 match	no match	no match	5' 19 of 20 match	no match
ndhG† CDS	3’ cgaaaaggcagaataaattgg	3' match	3' match	3' 1st 18 of 20 (5' to 3')	3' 1st 18 of 20 (5' to 3')	no match
ndhH† CDS	5’aaaaaccttcgcccaatttt	5' match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	5' match	5' 1st 13 (5' to 3')
ndhH† CDS	3’ gacgaattttccatctccag	3' match	3' match	3' match	3' 19 of 20 match	3' 19 of 20 match	no match
ndhI† CDS	5’caattacatcggagcgtttc	5' match	5' match	5' no hits at all	5' no hits at all	5' match	no match
ndhI† CDS	3’ gcatacgcgaacacatacttc	3' match	3' match	3' 19 of 20 match	3' match	3' no hits at all	3' 19 of 20 match
ndhJ† CDS	5’cgttttctgggtttggagaa	5' match	no match	5' no hits at all	5' no hits at all	5' 1st 10 match	5' 1st 17 (5' to 3')
ndhJ† CDS	3’ gccagcctatccaactttca	3' match	3' match	3' 19 of 20 match	3' match	3' match	no match
ndhK† CDS	5’gcgcgagaaataattgagga	5' match	5' match	5' 19 of last 20 (5' to 3')	5' 19 of last 20 (5' to 3')	5' 18 of 19 (3' to 5')	5' 1st 11 (5' to 3')
ndhK† CDS	3’ gagtactgcgccgaacataa	3' match	3' match	3' 19 of 20 match	3' 19 of 20 match	3' 19 of 20 match	no match
petA† CDS	5’agtgcttcaggatccattgc	5' match	5' match	5' 1st 18 match	5' 18 of 1st 19(5' to 3')	5' 2 thru 18 match	no match
petA† CDS	3’ tcgtacaattgaaccttttcaaac	3' match	3' match	3' 24 of 25 match	3' match	3' match	3' 18 of 1st 19 match
petB† CDS	5’taatgacggaggccaacttt	5' match	5' match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	no match
petB† CDS	3’ cgcctgtgacccaagttaat	3' match	3' match	3' 1st 17 of 18 (3' to 5')	3' 1st 17 of 18 (3' to 5')	3' 1st 17 match	3' match of first 11 5' to 3'
petD† CDS	5’gggagttaacaaagaaacctgact	no match	no match	no match	no match	no match	no match
petD† CDS	3’ aattatgtcccatccctttagc	3' match	3' match	3' match	3' match	3' match	3' 1st 12 (5' to 3')
petE† CDS	5’tttctatttggaatcgtcttaggc	5' match	5' match	5' match	5' match	5' match	no match
petE† CDS	3’ actgatccccacgcctgtat	3' match	3' match	3' match	3' match	3' match
petN† CDS	5’ aagtctcacttgggctgctt	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	5' 19 of 20 match	no match
petN† CDS	3’ agtccactcctcccccatac	3' match	3' match	3' match	3' 19 of 20 match	3' 19 of 20 match
psaA† CDS	5’ggaaaatgcagtcggatgtt	5' match	5' match	5' match	5' match	5' match	5' 18 of 19 (5' to 3')
psaA† CDS	3’ agaaatctcgaagccaacca	3' match	3' match	no match	no match	no match	no match